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Protein

Putative metal-dependent hydrolase YfiT

Gene

yfiT

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Possible metal-dependent hydrolase.

Cofactori

Zn2+1 Publication, Ni2+1 PublicationNote: Binds 1 zinc ion per subunit. Is able to bind nickel instead of zinc.1 Publication

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi67 – 671Zinc
Metal bindingi160 – 1601Zinc
Metal bindingi164 – 1641Zinc

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Ligandi

Metal-binding, Nickel, Zinc

Enzyme and pathway databases

BioCyciBSUB:BSU08390-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative metal-dependent hydrolase YfiT (EC:3.-.-.-)
Gene namesi
Name:yfiT
Ordered Locus Names:BSU08390
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 178178Putative metal-dependent hydrolase YfiTPRO_0000162373Add
BLAST

Proteomic databases

PaxDbiO31562.

Interactioni

Subunit structurei

Homodimer.1 Publication

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100004653.

Structurei

Secondary structure

1
178
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi21 – 4222Combined sources
Helixi47 – 504Combined sources
Beta strandi52 – 554Combined sources
Helixi61 – 8424Combined sources
Beta strandi85 – 873Combined sources
Helixi95 – 1006Combined sources
Helixi102 – 1065Combined sources
Helixi109 – 12921Combined sources
Helixi132 – 1354Combined sources
Beta strandi138 – 1403Combined sources
Turni142 – 1443Combined sources
Beta strandi147 – 1493Combined sources
Helixi150 – 17526Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1RXQX-ray1.70A/B/C/D1-178[»]
ProteinModelPortaliO31562.
SMRiO31562. Positions 4-178.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO31562.

Family & Domainsi

Sequence similaritiesi

Belongs to the metal hydrolase YfiT family.Curated

Phylogenomic databases

eggNOGiENOG4108YYS. Bacteria.
ENOG4111N31. LUCA.
HOGENOMiHOG000032434.
InParanoidiO31562.
OMAiHHIAHIT.
PhylomeDBiO31562.

Family and domain databases

Gene3Di1.20.120.450. 1 hit.
HAMAPiMF_01256. YfiT_hydrol. 1 hit.
InterProiIPR027369. DinB-/YfiT-like.
IPR024775. DinB-like.
IPR023774. Put_metal_dep_hydrolase_YfiT.
[Graphical view]
PfamiPF12867. DinB_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O31562-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSVNLSYPI GEYKPRESIS KEQKDKWIQV LEEVPAKLKQ AVEVMTDSQL
60 70 80 90 100
DTPYRDGGWT VRQVVHHLAD SHMNSYIRFK LSLTEETPAI RPYDEKAWSE
110 120 130 140 150
LKDSKTADPS GSLALLQELH GRWTALLRTL TDQQFKRGFY HPDTKEIITL
160 170
ENALGLYVWH SHHHIAHITE LSRRMGWS
Length:178
Mass (Da):20,666
Last modified:January 1, 1998 - v1
Checksum:i977ECAC0B6C91DD2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D85082 Genomic DNA. Translation: BAA24460.1.
AL009126 Genomic DNA. Translation: CAB12668.1.
PIRiF69804.
RefSeqiNP_388720.1. NC_000964.3.
WP_003243944.1. NZ_JNCM01000032.1.

Genome annotation databases

EnsemblBacteriaiCAB12668; CAB12668; BSU08390.
GeneIDi939711.
KEGGibsu:BSU08390.
PATRICi18973330. VBIBacSub10457_0879.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D85082 Genomic DNA. Translation: BAA24460.1.
AL009126 Genomic DNA. Translation: CAB12668.1.
PIRiF69804.
RefSeqiNP_388720.1. NC_000964.3.
WP_003243944.1. NZ_JNCM01000032.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1RXQX-ray1.70A/B/C/D1-178[»]
ProteinModelPortaliO31562.
SMRiO31562. Positions 4-178.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100004653.

Proteomic databases

PaxDbiO31562.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12668; CAB12668; BSU08390.
GeneIDi939711.
KEGGibsu:BSU08390.
PATRICi18973330. VBIBacSub10457_0879.

Phylogenomic databases

eggNOGiENOG4108YYS. Bacteria.
ENOG4111N31. LUCA.
HOGENOMiHOG000032434.
InParanoidiO31562.
OMAiHHIAHIT.
PhylomeDBiO31562.

Enzyme and pathway databases

BioCyciBSUB:BSU08390-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO31562.

Family and domain databases

Gene3Di1.20.120.450. 1 hit.
HAMAPiMF_01256. YfiT_hydrol. 1 hit.
InterProiIPR027369. DinB-/YfiT-like.
IPR024775. DinB-like.
IPR023774. Put_metal_dep_hydrolase_YfiT.
[Graphical view]
PfamiPF12867. DinB_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYFIT_BACSU
AccessioniPrimary (citable) accession number: O31562
Secondary accession number(s): Q79EW7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 15, 2005
Last sequence update: January 1, 1998
Last modified: September 7, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.