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Protein

Uncharacterized HTH-type transcriptional regulator YbgA

Gene

ybgA

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi30 – 4920H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU02370-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YbgA
Gene namesi
Name:ybgA
Ordered Locus Names:BSU02370
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 235235Uncharacterized HTH-type transcriptional regulator YbgAPRO_0000360573Add
BLAST

Proteomic databases

PaxDbiO31459.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100001308.

Structurei

3D structure databases

ProteinModelPortaliO31459.
SMRiO31459. Positions 2-235.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini2 – 7069HTH gntR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH gntR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108X79. Bacteria.
ENOG4111JSC. LUCA.
HOGENOMiHOG000228717.
InParanoidiO31459.
KOiK03710.
OMAiNLERTGD.
PhylomeDBiO31459.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
PRINTSiPR00035. HTHGNTR.
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O31459-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTALYSVIKF KIIELIKSGK YQANDQLPTE SEFCEQYDVS RTTVRLALQQ
60 70 80 90 100
LELEGYIKRI QGKGTFVSAA KIQTPIPHKI TSFAEQMRGL RSESKVLELV
110 120 130 140 150
VIPADHSIAE LLKMKENEPV NKLVRVRYAE GEPLQYHTSY IPWKAAPGLA
160 170 180 190 200
QEECTGSLFE LLRTKYNIEI SRGTESIEPI LTDETISGHL LTNVGAPAFL
210 220 230
SESLTYDKNE EVVEYAQIIT RGDRTKFTVE QSYHS
Length:235
Mass (Da):26,603
Last modified:January 1, 1998 - v1
Checksum:iE7AFB934DD2FE570
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB006424 Genomic DNA. Translation: BAA33134.1.
AL009126 Genomic DNA. Translation: CAB12031.1.
PIRiF69750.
RefSeqiNP_388119.1. NC_000964.3.
WP_003234841.1. NZ_JNCM01000030.1.

Genome annotation databases

EnsemblBacteriaiCAB12031; CAB12031; BSU02370.
GeneIDi938422.
KEGGibsu:BSU02370.
PATRICi18972023. VBIBacSub10457_0240.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB006424 Genomic DNA. Translation: BAA33134.1.
AL009126 Genomic DNA. Translation: CAB12031.1.
PIRiF69750.
RefSeqiNP_388119.1. NC_000964.3.
WP_003234841.1. NZ_JNCM01000030.1.

3D structure databases

ProteinModelPortaliO31459.
SMRiO31459. Positions 2-235.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100001308.

Proteomic databases

PaxDbiO31459.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12031; CAB12031; BSU02370.
GeneIDi938422.
KEGGibsu:BSU02370.
PATRICi18972023. VBIBacSub10457_0240.

Phylogenomic databases

eggNOGiENOG4108X79. Bacteria.
ENOG4111JSC. LUCA.
HOGENOMiHOG000228717.
InParanoidiO31459.
KOiK03710.
OMAiNLERTGD.
PhylomeDBiO31459.

Enzyme and pathway databases

BioCyciBSUB:BSU02370-MONOMER.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
PRINTSiPR00035. HTHGNTR.
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBGA_BACSU
AccessioniPrimary (citable) accession number: O31459
Secondary accession number(s): Q7DL45
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 1, 1998
Last modified: September 7, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.