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Protein

Probable serine/threonine-protein kinase YbdM

Gene

ybdM

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Catalytic activityi

ATP + a protein = ADP + a phosphoprotein.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei54 – 541ATPPROSITE-ProRule annotation
Active sitei149 – 1491Proton acceptorPROSITE-ProRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi31 – 399ATPPROSITE-ProRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. protein serine/threonine kinase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Kinase, Serine/threonine-protein kinase, Transferase

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciBSUB:BSU02030-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable serine/threonine-protein kinase YbdM (EC:2.7.11.1)
Gene namesi
Name:ybdM
Ordered Locus Names:BSU02030
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001570 Componenti: Chromosome

Organism-specific databases

GenoListiBSU02030.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 256256Probable serine/threonine-protein kinase YbdMPRO_0000360793Add
BLAST

Proteomic databases

PaxDbiO31435.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
dnaCP374693EBI-5255200,EBI-2122822
hprKO344835EBI-5255200,EBI-5242785
prkCO345073EBI-5255200,EBI-6667154
rsbTP424113EBI-5255200,EBI-5247957
spoIIABP107282EBI-5255200,EBI-9344705
yabTP375622EBI-5255200,EBI-9303331

Protein-protein interaction databases

IntActiO31435. 14 interactions.
STRINGi224308.BSU02030.

Structurei

3D structure databases

SMRiO31435. Positions 21-242.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini25 – 256232Protein kinasePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.PROSITE-ProRule annotation
Contains 1 protein kinase domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG0515.
HOGENOMiHOG000089759.
InParanoidiO31435.
KOiK08884.
OMAiQPFTELM.
OrthoDBiEOG6B35XT.
PhylomeDBiO31435.

Family and domain databases

InterProiIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR017441. Protein_kinase_ATP_BS.
[Graphical view]
PfamiPF00069. Pkinase. 1 hit.
[Graphical view]
SUPFAMiSSF56112. SSF56112. 1 hit.
PROSITEiPS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O31435-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALKLLKKLL FDRPLKNGVI LNHQYKIEEC LGMGGYGLVY LCTDILAQTP
60 70 80 90 100
YVLKQLRPTK AKKEKEKVRF QQEIKLLKNI HHPQIPGFID EFIIDGQAYY
110 120 130 140 150
VMQFIEGENI EELLFFRKQP FTELMALQLI SQLLEIIEYL HDRLIFHSDI
160 170 180 190 200
RTPNIIINDG RLCLIDFGLA KQLTPEEMEE IKVRKQDDFF DLGETLLFLL
210 220 230 240 250
YSQYKGKKKK NGTWLEELTL TKEVTLLLKR LLGIEEEYQH TASIREDLNR

AIQSVT
Length:256
Mass (Da):30,059
Last modified:December 31, 1997 - v1
Checksum:i2F9750DB23295343
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB006424 Genomic DNA. Translation: BAA33101.1.
AL009126 Genomic DNA. Translation: CAB11997.1.
PIRiH69747.
RefSeqiNP_388085.1. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAB11997; CAB11997; BSU02030.
GeneIDi938464.
KEGGibsu:BSU02030.
PATRICi18971951. VBIBacSub10457_0204.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB006424 Genomic DNA. Translation: BAA33101.1.
AL009126 Genomic DNA. Translation: CAB11997.1.
PIRiH69747.
RefSeqiNP_388085.1. NC_000964.3.

3D structure databases

SMRiO31435. Positions 21-242.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO31435. 14 interactions.
STRINGi224308.BSU02030.

Proteomic databases

PaxDbiO31435.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB11997; CAB11997; BSU02030.
GeneIDi938464.
KEGGibsu:BSU02030.
PATRICi18971951. VBIBacSub10457_0204.

Organism-specific databases

GenoListiBSU02030.

Phylogenomic databases

eggNOGiCOG0515.
HOGENOMiHOG000089759.
InParanoidiO31435.
KOiK08884.
OMAiQPFTELM.
OrthoDBiEOG6B35XT.
PhylomeDBiO31435.

Enzyme and pathway databases

BioCyciBSUB:BSU02030-MONOMER.

Family and domain databases

InterProiIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR017441. Protein_kinase_ATP_BS.
[Graphical view]
PfamiPF00069. Pkinase. 1 hit.
[Graphical view]
SUPFAMiSSF56112. SSF56112. 1 hit.
PROSITEiPS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence analysis of the 70kb region between 17 and 23 degree of the Bacillus subtilis chromosome."
    Haga K., Liu H., Yasumoto K., Takahashi H., Yoshikawa H.
    Submitted (JUN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiYBDM_BACSU
AccessioniPrimary (citable) accession number: O31435
Secondary accession number(s): Q7DL55
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 19, 2009
Last sequence update: December 31, 1997
Last modified: March 31, 2015
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.