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O31435 (YBDM_BACSU) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 102. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable serine/threonine-protein kinase YbdM

EC=2.7.11.1
Gene names
Name:ybdM
Ordered Locus Names:BSU02030
OrganismBacillus subtilis (strain 168) [Reference proteome] [HAMAP]
Taxonomic identifier224308 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length256 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + a protein = ADP + a phosphoprotein.

Sequence similarities

Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.

Contains 1 protein kinase domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 256256Probable serine/threonine-protein kinase YbdM
PRO_0000360793

Regions

Domain25 – 256232Protein kinase
Nucleotide binding31 – 399ATP By similarity

Sites

Active site1491Proton acceptor By similarity
Binding site541ATP By similarity

Sequences

Sequence LengthMass (Da)Tools
O31435 [UniParc].

Last modified January 1, 1998. Version 1.
Checksum: 2F9750DB23295343

FASTA25630,059
        10         20         30         40         50         60 
MALKLLKKLL FDRPLKNGVI LNHQYKIEEC LGMGGYGLVY LCTDILAQTP YVLKQLRPTK 

        70         80         90        100        110        120 
AKKEKEKVRF QQEIKLLKNI HHPQIPGFID EFIIDGQAYY VMQFIEGENI EELLFFRKQP 

       130        140        150        160        170        180 
FTELMALQLI SQLLEIIEYL HDRLIFHSDI RTPNIIINDG RLCLIDFGLA KQLTPEEMEE 

       190        200        210        220        230        240 
IKVRKQDDFF DLGETLLFLL YSQYKGKKKK NGTWLEELTL TKEVTLLLKR LLGIEEEYQH 

       250 
TASIREDLNR AIQSVT 

« Hide

References

« Hide 'large scale' references
[1]"Sequence analysis of the 70kb region between 17 and 23 degree of the Bacillus subtilis chromosome."
Haga K., Liu H., Yasumoto K., Takahashi H., Yoshikawa H.
Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168.
[2]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB006424 Genomic DNA. Translation: BAA33101.1.
AL009126 Genomic DNA. Translation: CAB11997.1.
PIRH69747.
RefSeqNP_388085.1. NC_000964.3.

3D structure databases

ProteinModelPortalO31435.
SMRO31435. Positions 21-242.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActO31435. 1 interaction.
STRING224308.BSU02030.

Proteomic databases

PaxDbO31435.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAB11997; CAB11997; BSU02030.
GeneID938464.
KEGGbsu:BSU02030.
PATRIC18971951. VBIBacSub10457_0204.

Organism-specific databases

GenoListBSU02030.

Phylogenomic databases

eggNOGCOG0515.
HOGENOMHOG000089759.
KOK08884.
OMAYYENVQD.
OrthoDBEOG6B35XT.
ProtClustDBCLSK2752303.

Enzyme and pathway databases

BioCycBSUB:BSU02030-MONOMER.

Family and domain databases

InterProIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR017441. Protein_kinase_ATP_BS.
[Graphical view]
PfamPF00069. Pkinase. 1 hit.
[Graphical view]
SUPFAMSSF56112. SSF56112. 1 hit.
PROSITEPS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYBDM_BACSU
AccessionPrimary (citable) accession number: O31435
Secondary accession number(s): Q7DL55
Entry history
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 1, 1998
Last modified: February 19, 2014
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList