rpoH

Functionⁱ

Regions

Feature key	Position(s)	DescriptionActions	Graphical view	Length
DNA bindingⁱ	257 – 276	H-T-H motifUniRule annotationAdd BLAST		20

GO - Molecular functionⁱ

bacterial sigma factor activity Source: UniProtKB-UniRule
DNA binding Source: UniProtKB-UniRule
DNA binding transcription factor activity Source: InterPro
zinc ion binding Source: InterPro

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

response to heat Source: InterPro
transcription initiation from bacterial-type RNA polymerase promoter Source: UniProtKB-UniRule

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Molecular function	DNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological process	Stress responseUniRule annotationImported, Transcription, Transcription regulation

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: RNA polymerase sigma factor RpoHUniRule annotation Alternative name(s): RNA polymerase sigma-32 factorUniRule annotation
Gene namesⁱ	Name:rpoHUniRule annotationImported ORF Names:SAMN04244550_02176Imported
Organismⁱ	Rhodobacter capsulatus (Rhodopseudomonas capsulata)Imported
Taxonomic identifierⁱ	1061 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Rhodobacter
Proteomesⁱ	UP000183812 Componentⁱ: Unassembled WGS sequence

Subcellular locationⁱ

Cytoplasm
UniRule annotation
Automatic assertion according to rulesⁱ
- HAMAP-Rule:MF_00961

GO - Cellular componentⁱ

cytoplasm Source: UniProtKB-SubCell

View the complete GO annotation on QuickGO ...

Keywords - Cellular componentⁱ

CytoplasmUniRule annotation

Interactionⁱ

Subunit structureⁱ

Interacts with the RNA polymerase core enzyme.UniRule annotation

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Domainⁱ	256 – 282	RNA_pol_sigma70InterPro annotationAdd BLAST		27

Region

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Regionⁱ	53 – 122	Sigma-70 factor domain-2UniRule annotationAdd BLAST		70

Coiled coil

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Coiled coilⁱ	206 – 240	Sequence analysisAdd BLAST		35
Coiled coilⁱ	257 – 277	Sequence analysisAdd BLAST		21

Motif

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Motifⁱ	77 – 80	Interaction with polymerase core subunit RpoCUniRule annotation		4

Keywords - Domainⁱ

Coiled coilSequence analysis

Phylogenomic databases

eggNOGⁱ	ENOG4105DEK. Bacteria. COG0568. LUCA.

eggNOGⁱ

ENOG4105DEK. Bacteria.
COG0568. LUCA.

Family and domain databases

HAMAPⁱ	MF_00961. Sigma70_RpoH. 1 hit.
InterProⁱ	View protein in InterPro IPR014284. RNA_pol_sigma-70_dom. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR012759. RNA_pol_sigma_RpoH_proteobac.
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04545. Sigma70_r4. 1 hit.
PIRSFⁱ	PIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSⁱ	PR00046. SIGMA70FCT.
SUPFAMⁱ	SSF88659. SSF88659. 1 hit. SSF88946. SSF88946. 1 hit.
TIGRFAMsⁱ	TIGR02392. rpoH_proteo. 1 hit. TIGR02937. sigma70-ECF. 1 hit.
PROSITEⁱ	View protein in PROSITE PS00716. SIGMA70_2. 1 hit.

Sequenceⁱ

Sequence statusⁱ: Complete.

O30806-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MSSYANLPAP SPEQGLNRYL QEIRKFPLLE PEEEYMLAKA WVDHQDPKAA 
        60         70         80         90        100
HRLVTSHLRL AAKIAMGYRG YGLPQAEVIS EANVGLMQAV KRFDPERGFR 
       110        120        130        140        150
LATYAMWWIR AAIQEYILRS WSLVKLGTTS AQKKLFFNLR KAKSKIGAFE 
       160        170        180        190        200
EGDLRPDAVA KIAHDLNVSE GDVIEMNRRL AGSDASLNAQ VGAGDGESAT 
       210        220        230        240        250
QWQDWLEDED ADQAEAYAEA DELQARRAML VAAMDVLNER ERDILMARRL 
       260        270        280        290 
RDEPVTLEEL SSQYDVSRER IRQIEVRAFE KLQGRMKALA KEKGMSLPG

Length:299

Mass (Da):33,822

Last modified:January 1, 1998 - v1

Checksum:ⁱ79DDCFD148A228FB

GO

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AF017436 Genomic DNA. Translation: AAC97123.1. FNAY01000010 Genomic DNA. Translation: SDF39482.1.
NCBI Reference Sequences More...RefSeqⁱ	WP_055209793.1. NZ_LLVV01000002.1.

Genome annotation databases

EnsemblBacteriaⁱ	KQB15488; KQB15488; AP071_14095. KQB16920; KQB16920; AP073_09890.

EnsemblBacteriaⁱ

KQB15488; KQB15488; AP071_14095.
KQB16920; KQB16920; AP073_09890.

Protein	Similar proteins	Organisms	Length	Cluster ID	Cluster name	Size
O30806	A0A0E2PAR8 D5AP35 A0A1N7PLP1 A0A285SBU9	Rhodobacter capsulatus Y262 Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) Rhodobacter aestuarii Rhodobacter maris	299	UniRef90_A0A0E2PAR8	Cluster: RNA polymerase sigma factor RpoH	5

Protein	Similar proteins	Organisms	Length	Cluster ID	Cluster name	Size
O30806	A0A0E2PAR8 D5AP35 A0A1N7PLP1 A0A285SBU9 A0A257HIS7 A0A259LMK6 A0A257ZR43 A0A258LP81 A0A259K5B9 A0A259CCL9 +16	Rhodobacter capsulatus Y262 Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) Rhodobacter aestuarii Rhodobacter maris Rhizobiales bacterium PAR1 Hyphomonas sp. 34-62-18 Rhizobiales bacterium 12-68-15 Rhizobiales bacterium 35-68-8 Rhizobiales bacterium 39-66-18 Rhizobiales bacterium 17-65-6 And more	299	UniRef50_A0A0E2PAR8	Cluster: RNA polymerase sigma factor RpoH	27

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AF017436 Genomic DNA. Translation: AAC97123.1. FNAY01000010 Genomic DNA. Translation: SDF39482.1.
NCBI Reference Sequences More...RefSeqⁱ	WP_055209793.1. NZ_LLVV01000002.1.

3D structure databases

ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

EnsemblBacteriaⁱ	KQB15488; KQB15488; AP071_14095. KQB16920; KQB16920; AP073_09890.

EnsemblBacteriaⁱ

KQB15488; KQB15488; AP071_14095.
KQB16920; KQB16920; AP073_09890.

Phylogenomic databases

eggNOGⁱ	ENOG4105DEK. Bacteria. COG0568. LUCA.

eggNOGⁱ

ENOG4105DEK. Bacteria.
COG0568. LUCA.

Family and domain databases

HAMAPⁱ	MF_00961. Sigma70_RpoH. 1 hit.
InterProⁱ	View protein in InterPro IPR014284. RNA_pol_sigma-70_dom. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR012759. RNA_pol_sigma_RpoH_proteobac.
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04545. Sigma70_r4. 1 hit.
PIRSFⁱ	PIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSⁱ	PR00046. SIGMA70FCT.
SUPFAMⁱ	SSF88659. SSF88659. 1 hit. SSF88946. SSF88946. 1 hit.
TIGRFAMsⁱ	TIGR02392. rpoH_proteo. 1 hit. TIGR02937. sigma70-ECF. 1 hit.
PROSITEⁱ	View protein in PROSITE PS00716. SIGMA70_2. 1 hit.
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	O30806_RHOCA
Accessionⁱ	O30806Primary (citable) accession number: O30806
Entry historyⁱ	Integrated into UniProtKB/TrEMBL:	January 1, 1998
	Last sequence update:	January 1, 1998
	Last modified:	March 28, 2018
	This is version 97 of the entry and version 1 of the sequence. See complete history.
Entry statusⁱ	Unreviewed (UniProtKB/TrEMBL)

Miscellaneousⁱ

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.UniRule annotation

Keywords - Technical termⁱ

Complete proteomeImported

UniProtKB - O30806 (O30806_RHOCA)

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RNA polymerase sigma factor RpoH

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Functionⁱ

Regions

GO - Molecular functionⁱ

GO - Biological processⁱ

Keywordsⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

GO - Cellular componentⁱ

Keywords - Cellular componentⁱ

Interactionⁱ

Subunit structureⁱ

Family & Domainsⁱ

Domains and Repeats

Region

Coiled coil

Motif

Keywords - Domainⁱ

Phylogenomic databases

Family and domain databases

Sequenceⁱ

Sequence databases

Genome annotation databases

Similar proteinsⁱ

Cross-referencesⁱ

Sequence databases

3D structure databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Family and domain databases

Entry informationⁱ

Miscellaneousⁱ

Caution

Keywords - Technical termⁱ

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - O30806 (O30806_RHOCA)

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RNA polymerase sigma factor RpoH

rpoH

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<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Regions

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Region

Coiled coil

Motif

Phylogenomic databases

Family and domain databases

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Caution

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

GO - Cellular componentⁱ

Interactionⁱ

Family & Domainsⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ