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Protein

RNA polymerase sigma factor RpoH

Gene

rpoH

Organism
Rhodobacter capsulatus (Rhodopseudomonas capsulata)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi257 – 276H-T-H motifUniRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological processStress responseUniRule annotationImported, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factor RpoHUniRule annotation
Alternative name(s):
RNA polymerase sigma-32 factorUniRule annotation
Gene namesi
Name:rpoHUniRule annotationImported
ORF Names:SAMN04244550_02176Imported
OrganismiRhodobacter capsulatus (Rhodopseudomonas capsulata)Imported
Taxonomic identifieri1061 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter
Proteomesi
  • UP000183812 Componenti: Unassembled WGS sequence

Subcellular locationi

O30806:
  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Interacts with the RNA polymerase core enzyme.UniRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini256 – 282RNA_pol_sigma70InterPro annotationAdd BLAST27

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni53 – 122Sigma-70 factor domain-2UniRule annotationAdd BLAST70

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili206 – 240Sequence analysisAdd BLAST35

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi77 – 80Interaction with polymerase core subunit RpoCUniRule annotation4

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG4105DEK. Bacteria.
COG0568. LUCA.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_00961. Sigma70_RpoH. 1 hit.
InterProiView protein in InterPro
IPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR012759. RNA_pol_sigma_RpoH_proteobac.
IPR036388. WH-like_DNA-bd_sf.
PfamiView protein in Pfam
PF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04545. Sigma70_r4. 1 hit.
PIRSFiPIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02392. rpoH_proteo. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiView protein in PROSITE
PS00716. SIGMA70_2. 1 hit.

Sequencei

Sequence statusi: Complete.

O30806-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSYANLPAP SPEQGLNRYL QEIRKFPLLE PEEEYMLAKA WVDHQDPKAA
60 70 80 90 100
HRLVTSHLRL AAKIAMGYRG YGLPQAEVIS EANVGLMQAV KRFDPERGFR
110 120 130 140 150
LATYAMWWIR AAIQEYILRS WSLVKLGTTS AQKKLFFNLR KAKSKIGAFE
160 170 180 190 200
EGDLRPDAVA KIAHDLNVSE GDVIEMNRRL AGSDASLNAQ VGAGDGESAT
210 220 230 240 250
QWQDWLEDED ADQAEAYAEA DELQARRAML VAAMDVLNER ERDILMARRL
260 270 280 290
RDEPVTLEEL SSQYDVSRER IRQIEVRAFE KLQGRMKALA KEKGMSLPG
Length:299
Mass (Da):33,822
Last modified:January 1, 1998 - v1
Checksum:i79DDCFD148A228FB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF017436 Genomic DNA. Translation: AAC97123.1.
FNAY01000010 Genomic DNA. Translation: SDF39482.1.
RefSeqiWP_055209793.1. NZ_LLVV01000002.1.

Genome annotation databases

EnsemblBacteriaiKQB15488; KQB15488; AP071_14095.
KQB16920; KQB16920; AP073_09890.

Similar proteinsi

Entry informationi

Entry nameiO30806_RHOCA
AccessioniPrimary (citable) accession number: O30806
Entry historyiIntegrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: October 25, 2017
This is version 93 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.UniRule annotation

Keywords - Technical termi

Complete proteomeImported