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Protein

Carbon dioxide-concentrating mechanism protein CcmK

Gene

ccmK

Organism
Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.

Enzyme and pathway databases

BioCyciSSP32049:GKF7-1803-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Carbon dioxide-concentrating mechanism protein CcmK
Alternative name(s):
Carboxysome shell protein CsoS1
Gene namesi
Name:ccmK
Synonyms:csoS1
Ordered Locus Names:SYNPCC7002_A1802
OrganismiSynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum)
Taxonomic identifieri32049 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
ProteomesiUP000001688 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 112112Carbon dioxide-concentrating mechanism protein CcmKPRO_0000201502Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi32049.SYNPCC7002_A1802.

Structurei

3D structure databases

ProteinModelPortaliO30709.
SMRiO30709. Positions 2-101.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG4577.
HOGENOMiHOG000286836.
KOiK08696.
OMAiSWHIIAR.
OrthoDBiEOG6ZH2H4.

Family and domain databases

InterProiIPR020808. Bact_microcomp_CS.
IPR000249. Microcompartment_bac.
[Graphical view]
PfamiPF00936. BMC. 1 hit.
[Graphical view]
SMARTiSM00877. BMC. 1 hit.
[Graphical view]
PROSITEiPS01139. BACT_MICROCOMP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O30709-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSIAVGMVET LGFPAVVEAA DAMVKAARVT LVGYEKIGSG RVTVIVRGDV
60 70 80 90 100
SEVQASVSAG TDNVSRVNGG QVLSTHIIAR PHENLEYVLP IRYTEAVEQF
110
RESVNPQPLR RV
Length:112
Mass (Da):12,033
Last modified:June 10, 2008 - v2
Checksum:iAA5606657F41B0AC
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti2 – 21S → P in AAB66835 (Ref. 1) Curated
Sequence conflicti8 – 81V → I in AAB66835 (Ref. 1) Curated
Sequence conflicti11 – 111L → R in AAB66835 (Ref. 1) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF015889 Genomic DNA. Translation: AAB66835.1.
CP000951 Genomic DNA. Translation: ACA99790.1.
RefSeqiYP_001735046.1. NC_010475.1.

Genome annotation databases

EnsemblBacteriaiACA99790; ACA99790; SYNPCC7002_A1802.
KEGGisyp:SYNPCC7002_A1802.
PATRICi23818234. VBISynSp37135_2058.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF015889 Genomic DNA. Translation: AAB66835.1.
CP000951 Genomic DNA. Translation: ACA99790.1.
RefSeqiYP_001735046.1. NC_010475.1.

3D structure databases

ProteinModelPortaliO30709.
SMRiO30709. Positions 2-101.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi32049.SYNPCC7002_A1802.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACA99790; ACA99790; SYNPCC7002_A1802.
KEGGisyp:SYNPCC7002_A1802.
PATRICi23818234. VBISynSp37135_2058.

Phylogenomic databases

eggNOGiCOG4577.
HOGENOMiHOG000286836.
KOiK08696.
OMAiSWHIIAR.
OrthoDBiEOG6ZH2H4.

Enzyme and pathway databases

BioCyciSSP32049:GKF7-1803-MONOMER.

Family and domain databases

InterProiIPR020808. Bact_microcomp_CS.
IPR000249. Microcompartment_bac.
[Graphical view]
PfamiPF00936. BMC. 1 hit.
[Graphical view]
SMARTiSM00877. BMC. 1 hit.
[Graphical view]
PROSITEiPS01139. BACT_MICROCOMP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Ludwig M., Sultemeyer D., Badger M.R., Price G.D.
    Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Complete sequence of Synechococcus sp. PCC 7002."
    Li T., Zhao J., Zhao C., Liu Z., Zhao F., Marquardt J., Nomura C.T., Persson S., Detter J.C., Richardson P.M., Lanz C., Schuster S.C., Wang J., Li S., Huang X., Cai T., Yu Z., Luo J., Zhao J., Bryant D.A.
    Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27264 / PCC 7002 / PR-6.

Entry informationi

Entry nameiCCMK_SYNP2
AccessioniPrimary (citable) accession number: O30709
Secondary accession number(s): B1XQ08
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: June 10, 2008
Last modified: April 1, 2015
This is version 61 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.