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Protein

Uncharacterized protein YodL

Gene

yodL

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU19640-MONOMER.

Protein family/group databases

TCDBi8.A.42.1.1. 8.a.42. the small hydrophilic yodl domain/protein ((yodl) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YodL
Gene namesi
Name:yodL
Synonyms:yokX
Ordered Locus Names:BSU19640
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001570: Chromosome

Organism-specific databases

GenoListiBSU19640.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 104104Uncharacterized protein YodLPRO_0000049658Add
BLAST

Proteomic databases

PaxDbiO30472.

Interactioni

Protein-protein interaction databases

STRINGi224308.BSU19640.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG79890.
HOGENOMiHOG000261912.
OMAiGWSKINR.
OrthoDBiEOG60GRXZ.

Family and domain databases

InterProiIPR025923. YodL-like.
[Graphical view]
PfamiPF14191. YodL. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O30472-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMLSVFKKKS CSYDVTIFQT PRFGEKKGYR AVYRTELNGS DHQDVLKRAF
60 70 80 90 100
SLFNVFDTVP SDYDARFMAT GDVILIDEGR KGKTYYQLLP AGWRKINRLI

VQTT
Length:104
Mass (Da):12,055
Last modified:May 26, 2009 - v3
Checksum:i59293981BC16E3CA
GO

Sequence cautioni

The sequence AAB72066.1 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti83 – 831K → R in AAB81163 (PubMed:9734814).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF015775 Genomic DNA. Translation: AAB72066.1. Different initiation.
AF006665 Genomic DNA. Translation: AAB81163.1.
AL009126 Genomic DNA. Translation: CAB13855.2.
PIRiG69903.
RefSeqiNP_389845.2. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAB13855; CAB13855; BSU19640.
GeneIDi940030.
KEGGibsu:BSU19640.
PATRICi18975783. VBIBacSub10457_2082.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF015775 Genomic DNA. Translation: AAB72066.1. Different initiation.
AF006665 Genomic DNA. Translation: AAB81163.1.
AL009126 Genomic DNA. Translation: CAB13855.2.
PIRiG69903.
RefSeqiNP_389845.2. NC_000964.3.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.BSU19640.

Protein family/group databases

TCDBi8.A.42.1.1. 8.a.42. the small hydrophilic yodl domain/protein ((yodl) family.

Proteomic databases

PaxDbiO30472.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13855; CAB13855; BSU19640.
GeneIDi940030.
KEGGibsu:BSU19640.
PATRICi18975783. VBIBacSub10457_2082.

Organism-specific databases

GenoListiBSU19640.

Phylogenomic databases

eggNOGiNOG79890.
HOGENOMiHOG000261912.
OMAiGWSKINR.
OrthoDBiEOG60GRXZ.

Enzyme and pathway databases

BioCyciBSUB:BSU19640-MONOMER.

Family and domain databases

InterProiIPR025923. YodL-like.
[Graphical view]
PfamiPF14191. YodL. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence analysis of the Bacillus subtilis 168 chromosome region between the sspC and odhA loci (184 degrees-180 degrees)."
    Ghim S.-Y., Choi S.-K., Shin B.-S., Jeong Y.-M., Sorokin A., Ehrlich S.D., Park S.-H.
    DNA Res. 5:195-201(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiYODL_BACSU
AccessioniPrimary (citable) accession number: O30472
Secondary accession number(s): O34372
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 25, 2003
Last sequence update: May 26, 2009
Last modified: January 7, 2015
This is version 65 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.