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Protein

UPF0107 protein AF_0055

Gene

AF_0055

Organism
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciAFUL224325:GJBC-56-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0107 protein AF_0055
Gene namesi
Ordered Locus Names:AF_0055
OrganismiArchaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Taxonomic identifieri224325 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaArchaeoglobiArchaeoglobalesArchaeoglobaceaeArchaeoglobus
Proteomesi
  • UP000002199 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 132132UPF0107 protein AF_0055PRO_0000152563Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi224325.AF0055.

Structurei

Secondary structure

1
132
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 43Combined sources
Beta strandi6 – 94Combined sources
Beta strandi12 – 198Combined sources
Turni32 – 343Combined sources
Beta strandi41 – 433Combined sources
Beta strandi51 – 566Combined sources
Helixi67 – 748Combined sources
Beta strandi79 – 857Combined sources
Helixi88 – 9710Combined sources
Beta strandi101 – 1033Combined sources
Helixi108 – 1125Combined sources
Beta strandi117 – 1226Combined sources
Turni123 – 1264Combined sources
Beta strandi127 – 1315Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2HI6NMR-A2-132[»]
ProteinModelPortaliO30181.
SMRiO30181. Positions 1-132.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO30181.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0107 family.Curated

Phylogenomic databases

eggNOGiarCOG04279. Archaea.
COG1786. LUCA.
KOiK09128.
OMAiFPYGKGS.

Family and domain databases

Gene3Di3.50.30.10. 1 hit.
HAMAPiMF_00078. UPF0107.
InterProiIPR015928. Aconitase/3IPM_dehydase_swvl.
IPR002840. DUF126.
IPR008279. PEP-util_enz_mobile_dom.
IPR012016. UPF0107.
IPR020794. UPF0107_arc.
[Graphical view]
PfamiPF01989. DUF126. 1 hit.
[Graphical view]
PIRSFiPIRSF004966. UCP004966. 1 hit.
SUPFAMiSSF52016. SSF52016. 1 hit.

Sequencei

Sequence statusi: Complete.

O30181-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKFACRAITR GRAEGEALVT KEYISFLGGI DKETGIVKED CEIKGESVAG
60 70 80 90 100
RILVFPGGKG STVGSYVLLN LRKNGVAPKA IINKKTETII AVGAAMAEIP
110 120 130
LVEVRDEKFF EAVKTGDRVV VNADEGYVEL IE
Length:132
Mass (Da):14,189
Last modified:January 1, 1998 - v1
Checksum:i9C97ABCF9512F20D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000782 Genomic DNA. Translation: AAB91166.1.
PIRiG69256.

Genome annotation databases

EnsemblBacteriaiAAB91166; AAB91166; AF_0055.
KEGGiafu:AF_0055.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000782 Genomic DNA. Translation: AAB91166.1.
PIRiG69256.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2HI6NMR-A2-132[»]
ProteinModelPortaliO30181.
SMRiO30181. Positions 1-132.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224325.AF0055.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91166; AAB91166; AF_0055.
KEGGiafu:AF_0055.

Phylogenomic databases

eggNOGiarCOG04279. Archaea.
COG1786. LUCA.
KOiK09128.
OMAiFPYGKGS.

Enzyme and pathway databases

BioCyciAFUL224325:GJBC-56-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO30181.

Family and domain databases

Gene3Di3.50.30.10. 1 hit.
HAMAPiMF_00078. UPF0107.
InterProiIPR015928. Aconitase/3IPM_dehydase_swvl.
IPR002840. DUF126.
IPR008279. PEP-util_enz_mobile_dom.
IPR012016. UPF0107.
IPR020794. UPF0107_arc.
[Graphical view]
PfamiPF01989. DUF126. 1 hit.
[Graphical view]
PIRSFiPIRSF004966. UCP004966. 1 hit.
SUPFAMiSSF52016. SSF52016. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus."
    Klenk H.-P., Clayton R.A., Tomb J.-F., White O., Nelson K.E., Ketchum K.A., Dodson R.J., Gwinn M.L., Hickey E.K., Peterson J.D., Richardson D.L., Kerlavage A.R., Graham D.E., Kyrpides N.C., Fleischmann R.D., Quackenbush J., Lee N.H., Sutton G.G.
    , Gill S.R., Kirkness E.F., Dougherty B.A., McKenney K., Adams M.D., Loftus B.J., Peterson S.N., Reich C.I., McNeil L.K., Badger J.H., Glodek A., Zhou L., Overbeek R., Gocayne J.D., Weidman J.F., McDonald L.A., Utterback T.R., Cotton M.D., Spriggs T., Artiach P., Kaine B.P., Sykes S.M., Sadow P.W., D'Andrea K.P., Bowman C., Fujii C., Garland S.A., Mason T.M., Olsen G.J., Fraser C.M., Smith H.O., Woese C.R., Venter J.C.
    Nature 390:364-370(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126.

Entry informationi

Entry nameiY055_ARCFU
AccessioniPrimary (citable) accession number: O30181
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: January 1, 1998
Last modified: November 11, 2015
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.