O29889 (O29889_ARCFU) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA repair protein RAD25 EMBL AAB90879.1

Gene names

Ordered Locus Names:

AF_0358

Organism

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) [Reference proteome] [HAMAP] EMBL AAB90879.1

Taxonomic identifier

224325 [NCBI]

Taxonomic lineage

cellular organisms › Archaea › Euryarchaeota › Archaeoglobi › Archaeoglobales › Archaeoglobaceae › Archaeoglobus › Archaeoglobus fulgidus

Protein attributes

Sequence length	452 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	ATP-binding RuleBase RU004294 Nucleotide-binding
Technical term	3D-structure PDB 2FZ4 PDB 2FWR PDB 2FZL Complete proteome Reference proteome
Gene Ontology (GO)
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA binding Inferred from electronic annotation. Source: InterPro helicase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O29889 [UniParc]. Last modified January 1, 1998. Version 1. Checksum: 19FDFCF6C5F6F485	FASTA	452	51,768
	10 20 30 40 50 60 MQMIAEIYYE RGTIVVKGDA HVPHAKFDSR SGTYRALAFR YRDIIEYFES NGIEFVDNAA 70 80 90 100 110 120 DPIPTPYFDA EISLRDYQEK ALERWLVDKR GCIVLPTGSG KTHVAMAAIN ELSTPTLIVV 130 140 150 160 170 180 PTLALAEQWK ERLGIFGEEY VGEFSGRIKE LKPLTVSTYD SAYVNAEKLG NRFMLLIFDE 190 200 210 220 230 240 VHHLPAESYV QIAQMSIAPF RLGLTATFER EDGRHEILKE VVGGKVFELF PDSLAGKHLA 250 260 270 280 290 300 KYTIKRIFVP LAEDERVEYE KREKVYKQFL RARGITLRRA EDFNKIVMAS GYDERAYEAL 310 320 330 340 350 360 RAWEEARRIA FNSKNKIRKL REILERHRKD KIIIFTRHNE LVYRISKVFL IPAITHRTSR 370 380 390 400 410 420 EEREEILEGF RTGRFRAIVS SQVLDEGIDV PDANVGVIMS GSGSAREYIQ RLGRILRPSK 430 440 450 GKKEAVLYEL ISRGTGEVNT ARRRKNAAKG AA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus." Klenk H.-P., Clayton R.A., Tomb J.-F., White O., Nelson K.E., Ketchum K.A., Dodson R.J., Gwinn M.L., Hickey E.K., Peterson J.D., Richardson D.L., Kerlavage A.R., Graham D.E., Kyrpides N.C., Fleischmann R.D., Quackenbush J., Lee N.H., Sutton G.G. , Gill S.R., Kirkness E.F., Dougherty B.A., McKenney K., Adams M.D., Loftus B.J., Peterson S.N., Reich C.I., McNeil L.K., Badger J.H., Glodek A., Zhou L., Overbeek R., Gocayne J.D., Weidman J.F., McDonald L.A., Utterback T.R., Cotton M.D., Spriggs T., Artiach P., Kaine B.P., Sykes S.M., Sadow P.W., D'Andrea K.P., Bowman C., Fujii C., Garland S.A., Mason T.M., Olsen G.J., Fraser C.M., Smith H.O., Woese C.R., Venter J.C. Nature 390:364-370(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126.
[2]	"Conserved XPB core structure and motifs for DNA unwinding: implications for pathway selection of transcription or excision repair." Fan L., Arvai A.S., Cooper P.K., Iwai S., Hanaoka F., Tainer J.A. Mol. Cell 22:27-37(2006) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 1-217.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE000782 Genomic DNA. Translation: AAB90879.1.

PIR

F69294.

RefSeq

NP_069194.1. NC_000917.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2FWR	X-ray	2.60	A/B/C/D	1-452	[»]
2FZ4	X-ray	2.40	A	1-217	[»]
2FZL	X-ray	2.90	A	237-434	[»]

ProteinModelPortal

O29889.

SMR

O29889. Positions 3-436.

ModBase

Search...

Protein-protein interaction databases

STRING

224325.AF0358.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

AAB90879; AAB90879; AF_0358.

GeneID

1483573.

KEGG

afu:AF0358.

Phylogenomic databases

eggNOG

COG1061.

OMA

SKVLDEG.

ProtClustDB

CLSK541413.

Enzyme and pathway databases

BioCyc

AFUL224325:GJBC-368-MONOMER.

Family and domain databases

InterPro

IPR006935. Helicase/UvrB_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
[Graphical view]

Pfam

PF00271. Helicase_C. 1 hit.
PF04851. ResIII. 1 hit.
[Graphical view]

SMART

SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]

PROSITE

PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]

ProtoNet

Search...

Other

EvolutionaryTrace

O29889.

Entry information

Entry name

O29889_ARCFU

Accession

Primary (citable) accession number: O29889

Entry history

Integrated into UniProtKB/TrEMBL:	January 1, 1998
Last sequence update:	January 1, 1998
Last modified:	May 1, 2013
This is version 91 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)