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O29889

- O29889_ARCFU

UniProt

O29889 - O29889_ARCFU

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Protein
Submitted name:

DNA repair protein RAD25

Gene
AF_0358
Organism
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. helicase activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciAFUL224325:GJBC-368-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA repair protein RAD25Imported
Gene namesi
Ordered Locus Names:AF_0358Imported
OrganismiArchaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)Imported
Taxonomic identifieri224325 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaArchaeoglobiArchaeoglobalesArchaeoglobaceaeArchaeoglobus
ProteomesiUP000002199: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi224325.AF0358.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2FWRX-ray2.60A/B/C/D1-452[»]
2FZ4X-ray2.40A1-217[»]
2FZLX-ray2.90A237-434[»]
ProteinModelPortaliO29889.
SMRiO29889. Positions 3-436.

Miscellaneous databases

EvolutionaryTraceiO29889.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni98 – 1014Phosphate bindingImported

Phylogenomic databases

eggNOGiCOG1061.
OMAiHHLPTDF.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR006935. Helicase/UvrB_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00271. Helicase_C. 1 hit.
PF04851. ResIII. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O29889-1 [UniParc]FASTAAdd to Basket

« Hide

MQMIAEIYYE RGTIVVKGDA HVPHAKFDSR SGTYRALAFR YRDIIEYFES    50
NGIEFVDNAA DPIPTPYFDA EISLRDYQEK ALERWLVDKR GCIVLPTGSG 100
KTHVAMAAIN ELSTPTLIVV PTLALAEQWK ERLGIFGEEY VGEFSGRIKE 150
LKPLTVSTYD SAYVNAEKLG NRFMLLIFDE VHHLPAESYV QIAQMSIAPF 200
RLGLTATFER EDGRHEILKE VVGGKVFELF PDSLAGKHLA KYTIKRIFVP 250
LAEDERVEYE KREKVYKQFL RARGITLRRA EDFNKIVMAS GYDERAYEAL 300
RAWEEARRIA FNSKNKIRKL REILERHRKD KIIIFTRHNE LVYRISKVFL 350
IPAITHRTSR EEREEILEGF RTGRFRAIVS SQVLDEGIDV PDANVGVIMS 400
GSGSAREYIQ RLGRILRPSK GKKEAVLYEL ISRGTGEVNT ARRRKNAAKG 450
AA 452
Length:452
Mass (Da):51,768
Last modified:January 1, 1998 - v1
Checksum:i19FDFCF6C5F6F485
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE000782 Genomic DNA. Translation: AAB90879.1.
PIRiF69294.
RefSeqiNP_069194.1. NC_000917.1.

Genome annotation databases

EnsemblBacteriaiAAB90879; AAB90879; AF_0358.
GeneIDi1483573.
KEGGiafu:AF0358.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE000782 Genomic DNA. Translation: AAB90879.1 .
PIRi F69294.
RefSeqi NP_069194.1. NC_000917.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2FWR X-ray 2.60 A/B/C/D 1-452 [» ]
2FZ4 X-ray 2.40 A 1-217 [» ]
2FZL X-ray 2.90 A 237-434 [» ]
ProteinModelPortali O29889.
SMRi O29889. Positions 3-436.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 224325.AF0358.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB90879 ; AAB90879 ; AF_0358 .
GeneIDi 1483573.
KEGGi afu:AF0358.

Phylogenomic databases

eggNOGi COG1061.
OMAi HHLPTDF.

Enzyme and pathway databases

BioCyci AFUL224325:GJBC-368-MONOMER.

Miscellaneous databases

EvolutionaryTracei O29889.

Family and domain databases

Gene3Di 3.40.50.300. 2 hits.
InterProi IPR006935. Helicase/UvrB_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
[Graphical view ]
Pfami PF00271. Helicase_C. 1 hit.
PF04851. ResIII. 1 hit.
[Graphical view ]
SMARTi SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 2 hits.
PROSITEi PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus."
    Klenk H.P., Clayton R.A., Tomb J., White O., Nelson K.E., Ketchum K.A., Dodson R.J., Gwinn M., Hickey E.K., Peterson J.D., Richardson D.L., Kerlavage A.R., Graham D.E., Kyrpides N.C., Fleischmann R.D., Quackenbush J., Lee N.H., Sutton G.G.
    , Gill S., Kirkness E.F., Dougherty B.A., McKenney K., Adams M.D., Loftus B., Peterson S., Reich C.I., McNeil L.K., Badger J.H., Glodek A., Zhou L., Overbeek R., Gocayne J.D., Weidman J.F., McDonald L., Utterback T., Cotton M.D., Spriggs T., Artiach P., Kaine B.P., Sykes S.M., Sadow P.W., D'Andrea K.P., Bowman C., Fujii C., Garland S.A., Mason T.M., Olsen G.J., Fraser C.M., Smith H.O., Woese C.R., Venter J.C.
    Nature 390:364-370(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126.
  2. "Conserved XPB core structure and motifs for DNA unwinding: implications for pathway selection of transcription or excision repair."
    Fan L., Arvai A.S., Cooper P.K., Iwai S., Hanaoka F., Tainer J.A.
    Mol. Cell 22:27-37(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 1-217 IN COMPLEX WITH PHOSPHATE.

Entry informationi

Entry nameiO29889_ARCFU
AccessioniPrimary (citable) accession number: O29889
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: July 9, 2014
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteome

External Data

Dasty 3

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