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Protein
Submitted name:

DNA repair protein RAD25

Gene

AF_0358

Organism
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. hydrolase activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciAFUL224325:GJBC-368-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA repair protein RAD25Imported
Gene namesi
Ordered Locus Names:AF_0358Imported
OrganismiArchaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)Imported
Taxonomic identifieri224325 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaArchaeoglobiArchaeoglobalesArchaeoglobaceaeArchaeoglobus
ProteomesiUP000002199 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi224325.AF0358.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2FWRX-ray2.60A/B/C/D1-452[»]
2FZ4X-ray2.40A1-217[»]
2FZLX-ray2.90A237-434[»]
ProteinModelPortaliO29889.
SMRiO29889. Positions 3-436.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO29889.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1061.
OMAiLMHQWYA.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR006935. Helicase/UvrB_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00271. Helicase_C. 1 hit.
PF04851. ResIII. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O29889-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQMIAEIYYE RGTIVVKGDA HVPHAKFDSR SGTYRALAFR YRDIIEYFES
60 70 80 90 100
NGIEFVDNAA DPIPTPYFDA EISLRDYQEK ALERWLVDKR GCIVLPTGSG
110 120 130 140 150
KTHVAMAAIN ELSTPTLIVV PTLALAEQWK ERLGIFGEEY VGEFSGRIKE
160 170 180 190 200
LKPLTVSTYD SAYVNAEKLG NRFMLLIFDE VHHLPAESYV QIAQMSIAPF
210 220 230 240 250
RLGLTATFER EDGRHEILKE VVGGKVFELF PDSLAGKHLA KYTIKRIFVP
260 270 280 290 300
LAEDERVEYE KREKVYKQFL RARGITLRRA EDFNKIVMAS GYDERAYEAL
310 320 330 340 350
RAWEEARRIA FNSKNKIRKL REILERHRKD KIIIFTRHNE LVYRISKVFL
360 370 380 390 400
IPAITHRTSR EEREEILEGF RTGRFRAIVS SQVLDEGIDV PDANVGVIMS
410 420 430 440 450
GSGSAREYIQ RLGRILRPSK GKKEAVLYEL ISRGTGEVNT ARRRKNAAKG

AA
Length:452
Mass (Da):51,768
Last modified:January 1, 1998 - v1
Checksum:i19FDFCF6C5F6F485
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000782 Genomic DNA. Translation: AAB90879.1.
PIRiF69294.
RefSeqiNP_069194.1. NC_000917.1.

Genome annotation databases

EnsemblBacteriaiAAB90879; AAB90879; AF_0358.
GeneIDi1483573.
KEGGiafu:AF0358.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000782 Genomic DNA. Translation: AAB90879.1.
PIRiF69294.
RefSeqiNP_069194.1. NC_000917.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2FWRX-ray2.60A/B/C/D1-452[»]
2FZ4X-ray2.40A1-217[»]
2FZLX-ray2.90A237-434[»]
ProteinModelPortaliO29889.
SMRiO29889. Positions 3-436.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224325.AF0358.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB90879; AAB90879; AF_0358.
GeneIDi1483573.
KEGGiafu:AF0358.

Phylogenomic databases

eggNOGiCOG1061.
OMAiLMHQWYA.

Enzyme and pathway databases

BioCyciAFUL224325:GJBC-368-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO29889.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR006935. Helicase/UvrB_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00271. Helicase_C. 1 hit.
PF04851. ResIII. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus."
    Klenk H.-P., Clayton R.A., Tomb J.-F., White O., Nelson K.E., Ketchum K.A., Dodson R.J., Gwinn M.L., Hickey E.K., Peterson J.D., Richardson D.L., Kerlavage A.R., Graham D.E., Kyrpides N.C., Fleischmann R.D., Quackenbush J., Lee N.H., Sutton G.G.
    , Gill S.R., Kirkness E.F., Dougherty B.A., McKenney K., Adams M.D., Loftus B.J., Peterson S.N., Reich C.I., McNeil L.K., Badger J.H., Glodek A., Zhou L., Overbeek R., Gocayne J.D., Weidman J.F., McDonald L.A., Utterback T.R., Cotton M.D., Spriggs T., Artiach P., Kaine B.P., Sykes S.M., Sadow P.W., D'Andrea K.P., Bowman C., Fujii C., Garland S.A., Mason T.M., Olsen G.J., Fraser C.M., Smith H.O., Woese C.R., Venter J.C.
    Nature 390:364-370(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126Imported.
  2. "Conserved XPB core structure and motifs for DNA unwinding: implications for pathway selection of transcription or excision repair."
    Fan L., Arvai A.S., Cooper P.K., Iwai S., Hanaoka F., Tainer J.A.
    Mol. Cell 22:27-37(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 1-217.

Entry informationi

Entry nameiO29889_ARCFU
AccessioniPrimary (citable) accession number: O29889
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: April 29, 2015
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.