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Protein

Ribosome maturation protein SDO1 homolog

Gene

AF_0491

Organism
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciAFUL224325:GJBC-504-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome maturation protein SDO1 homolog
Gene namesi
Ordered Locus Names:AF_0491
OrganismiArchaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Taxonomic identifieri224325 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaArchaeoglobiArchaeoglobalesArchaeoglobaceaeArchaeoglobus
Proteomesi
  • UP000002199 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 234234Ribosome maturation protein SDO1 homologPRO_0000123768Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi224325.AF0491.

Structurei

Secondary structure

1
234
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni4 – 63Combined sources
Beta strandi8 – 147Combined sources
Beta strandi17 – 237Combined sources
Helixi25 – 328Combined sources
Helixi39 – 424Combined sources
Beta strandi43 – 464Combined sources
Beta strandi49 – 513Combined sources
Turni52 – 554Combined sources
Helixi60 – 678Combined sources
Helixi72 – 8211Combined sources
Beta strandi83 – 853Combined sources
Helixi89 – 11022Combined sources
Beta strandi111 – 1133Combined sources
Turni114 – 1174Combined sources
Helixi122 – 13110Combined sources
Turni143 – 1453Combined sources
Helixi146 – 1538Combined sources
Turni154 – 1563Combined sources
Beta strandi163 – 1708Combined sources
Helixi172 – 1743Combined sources
Helixi175 – 18511Combined sources
Beta strandi188 – 1936Combined sources
Beta strandi199 – 2068Combined sources
Helixi207 – 2093Combined sources
Helixi210 – 22112Combined sources
Beta strandi226 – 2338Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1P9QX-ray2.00C1-234[»]
1T95X-ray1.90A2-234[»]
ProteinModelPortaliO29759.
SMRiO29759. Positions 5-234.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO29759.

Family & Domainsi

Sequence similaritiesi

Belongs to the SDO1/SBDS family.Curated

Phylogenomic databases

eggNOGiarCOG04187. Archaea.
COG1500. LUCA.
KOiK14574.
OMAiAVNPQMD.

Family and domain databases

Gene3Di3.30.1250.10. 1 hit.
InterProiIPR009022. EFG_III-V.
IPR018978. Ribosome_mat_SBDS_C.
IPR018023. Ribosome_mat_SBDS_CS.
IPR019783. Ribosome_mat_SBDS_N.
IPR002140. Sdo1/SBDS.
[Graphical view]
PfamiPF01172. SBDS. 1 hit.
PF09377. SBDS_C. 1 hit.
[Graphical view]
SUPFAMiSSF54980. SSF54980. 1 hit.
SSF89895. SSF89895. 1 hit.
TIGRFAMsiTIGR00291. RNA_SBDS. 1 hit.
PROSITEiPS01267. UPF0023. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O29759-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVSLDKAVIA RLRKGGEEFE VLVDPYLARD LKEGKEVNFE DLLAAEEVFK
60 70 80 90 100
DAKKGERASV DELRKIFGTD DVFEIARKII LEGEVQITAE QRREMLEAKR
110 120 130 140 150
KQIINFISRN TIDPRTNAPH PPSRIERALE EAKVHIDIFK SVEAQVKDIV
160 170 180 190 200
KALKPILPLK FEEMEIAIKI PPEHTGRAIS ALYNFGGVTR EEWQRDGSWI
210 220 230
CVMRIPSGMY GDLMDLLGKV AKGEALTKVL RRIG
Length:234
Mass (Da):26,565
Last modified:January 1, 1998 - v1
Checksum:i9A6C3418756E54F1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000782 Genomic DNA. Translation: AAB90746.1.
PIRiC69311.
RefSeqiWP_010877998.1. NC_000917.1.

Genome annotation databases

EnsemblBacteriaiAAB90746; AAB90746; AF_0491.
GeneIDi1483708.
KEGGiafu:AF_0491.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000782 Genomic DNA. Translation: AAB90746.1.
PIRiC69311.
RefSeqiWP_010877998.1. NC_000917.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1P9QX-ray2.00C1-234[»]
1T95X-ray1.90A2-234[»]
ProteinModelPortaliO29759.
SMRiO29759. Positions 5-234.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224325.AF0491.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB90746; AAB90746; AF_0491.
GeneIDi1483708.
KEGGiafu:AF_0491.

Phylogenomic databases

eggNOGiarCOG04187. Archaea.
COG1500. LUCA.
KOiK14574.
OMAiAVNPQMD.

Enzyme and pathway databases

BioCyciAFUL224325:GJBC-504-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO29759.

Family and domain databases

Gene3Di3.30.1250.10. 1 hit.
InterProiIPR009022. EFG_III-V.
IPR018978. Ribosome_mat_SBDS_C.
IPR018023. Ribosome_mat_SBDS_CS.
IPR019783. Ribosome_mat_SBDS_N.
IPR002140. Sdo1/SBDS.
[Graphical view]
PfamiPF01172. SBDS. 1 hit.
PF09377. SBDS_C. 1 hit.
[Graphical view]
SUPFAMiSSF54980. SSF54980. 1 hit.
SSF89895. SSF89895. 1 hit.
TIGRFAMsiTIGR00291. RNA_SBDS. 1 hit.
PROSITEiPS01267. UPF0023. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSDO1_ARCFU
AccessioniPrimary (citable) accession number: O29759
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: January 1, 1998
Last modified: January 20, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.