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Protein

Ribosome maturation protein SDO1 homolog

Gene

AF_0491

Organism
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome maturation protein SDO1 homolog
Gene namesi
Ordered Locus Names:AF_0491
OrganismiArchaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Taxonomic identifieri224325 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaArchaeoglobiArchaeoglobalesArchaeoglobaceaeArchaeoglobus
Proteomesi
  • UP000002199 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001237681 – 234Ribosome maturation protein SDO1 homologAdd BLAST234

Interactioni

Protein-protein interaction databases

STRINGi224325.AF0491.

Structurei

Secondary structure

1234
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni4 – 6Combined sources3
Beta strandi8 – 14Combined sources7
Beta strandi17 – 23Combined sources7
Helixi25 – 32Combined sources8
Helixi39 – 42Combined sources4
Beta strandi43 – 46Combined sources4
Beta strandi49 – 51Combined sources3
Turni52 – 55Combined sources4
Helixi60 – 67Combined sources8
Helixi72 – 82Combined sources11
Beta strandi83 – 85Combined sources3
Helixi89 – 110Combined sources22
Beta strandi111 – 113Combined sources3
Turni114 – 117Combined sources4
Helixi122 – 131Combined sources10
Turni143 – 145Combined sources3
Helixi146 – 153Combined sources8
Turni154 – 156Combined sources3
Beta strandi163 – 170Combined sources8
Helixi172 – 174Combined sources3
Helixi175 – 185Combined sources11
Beta strandi188 – 193Combined sources6
Beta strandi199 – 206Combined sources8
Helixi207 – 209Combined sources3
Helixi210 – 221Combined sources12
Beta strandi226 – 233Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1P9QX-ray2.00C1-234[»]
1T95X-ray1.90A2-234[»]
ProteinModelPortaliO29759.
SMRiO29759.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO29759.

Family & Domainsi

Sequence similaritiesi

Belongs to the SDO1/SBDS family.Curated

Phylogenomic databases

eggNOGiarCOG04187. Archaea.
COG1500. LUCA.
KOiK14574.
OMAiAVNPQMD.

Family and domain databases

Gene3Di3.30.1250.10. 1 hit.
InterProiIPR009022. EFG_III-V.
IPR018978. Ribosome_mat_SBDS_C.
IPR018023. Ribosome_mat_SBDS_CS.
IPR019783. Ribosome_mat_SBDS_N.
IPR002140. Sdo1/SBDS.
[Graphical view]
PfamiPF01172. SBDS. 1 hit.
PF09377. SBDS_C. 1 hit.
[Graphical view]
SUPFAMiSSF54980. SSF54980. 1 hit.
SSF89895. SSF89895. 1 hit.
TIGRFAMsiTIGR00291. RNA_SBDS. 1 hit.
PROSITEiPS01267. UPF0023. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O29759-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVSLDKAVIA RLRKGGEEFE VLVDPYLARD LKEGKEVNFE DLLAAEEVFK
60 70 80 90 100
DAKKGERASV DELRKIFGTD DVFEIARKII LEGEVQITAE QRREMLEAKR
110 120 130 140 150
KQIINFISRN TIDPRTNAPH PPSRIERALE EAKVHIDIFK SVEAQVKDIV
160 170 180 190 200
KALKPILPLK FEEMEIAIKI PPEHTGRAIS ALYNFGGVTR EEWQRDGSWI
210 220 230
CVMRIPSGMY GDLMDLLGKV AKGEALTKVL RRIG
Length:234
Mass (Da):26,565
Last modified:January 1, 1998 - v1
Checksum:i9A6C3418756E54F1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000782 Genomic DNA. Translation: AAB90746.1.
PIRiC69311.
RefSeqiWP_010877998.1. NC_000917.1.

Genome annotation databases

EnsemblBacteriaiAAB90746; AAB90746; AF_0491.
GeneIDi1483708.
KEGGiafu:AF_0491.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000782 Genomic DNA. Translation: AAB90746.1.
PIRiC69311.
RefSeqiWP_010877998.1. NC_000917.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1P9QX-ray2.00C1-234[»]
1T95X-ray1.90A2-234[»]
ProteinModelPortaliO29759.
SMRiO29759.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224325.AF0491.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB90746; AAB90746; AF_0491.
GeneIDi1483708.
KEGGiafu:AF_0491.

Phylogenomic databases

eggNOGiarCOG04187. Archaea.
COG1500. LUCA.
KOiK14574.
OMAiAVNPQMD.

Miscellaneous databases

EvolutionaryTraceiO29759.

Family and domain databases

Gene3Di3.30.1250.10. 1 hit.
InterProiIPR009022. EFG_III-V.
IPR018978. Ribosome_mat_SBDS_C.
IPR018023. Ribosome_mat_SBDS_CS.
IPR019783. Ribosome_mat_SBDS_N.
IPR002140. Sdo1/SBDS.
[Graphical view]
PfamiPF01172. SBDS. 1 hit.
PF09377. SBDS_C. 1 hit.
[Graphical view]
SUPFAMiSSF54980. SSF54980. 1 hit.
SSF89895. SSF89895. 1 hit.
TIGRFAMsiTIGR00291. RNA_SBDS. 1 hit.
PROSITEiPS01267. UPF0023. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSDO1_ARCFU
AccessioniPrimary (citable) accession number: O29759
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: January 1, 1998
Last modified: November 2, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.