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O29511 (DAPF_ARCFU) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 73. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Diaminopimelate epimerase
Short name=DAP epimerase
EC=5.1.1.7
Gene names
Name:dapF
Ordered Locus Names:AF_0747
OrganismArchaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Taxonomic identifier224325 [NCBI]
Taxonomic lineageArchaea › Euryarchaeota › Archaeoglobi › Archaeoglobales › Archaeoglobaceae › Archaeoglobus

Protein attributes

Sequence length280 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate. HAMAP MF_00197

Pathway

Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1. HAMAP MF_00197

Subcellular location

Cytoplasm By similarity HAMAP MF_00197.

Sequence similarities

Belongs to the diaminopimelate epimerase family.

Ontologies

Keywords
   Biological processAmino-acid biosynthesis
Lysine biosynthesis
   Cellular componentCytoplasm
   Molecular functionIsomerase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processlysine biosynthetic process via diaminopimelate

Inferred from electronic annotation. Source: InterPro

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functiondiaminopimelate epimerase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 280280Diaminopimelate epimerase HAMAP MF_00197
PRO_0000149885

Sites

Active site761 By similarity
Active site2181 By similarity

Sequences

Sequence LengthMass (Da)Tools
O29511 [UniParc].

Last modified January 1, 1998. Version 1.
Checksum: 1DE1C5FA162EC289

FASTA28031,023
        10         20         30         40         50         60 
MRIAFTKMHG NGNDFVLIDE FEGVIVGEEE KPRFVRAVCH RNFGVGADGA LFVQPSQKAD 

        70         80         90        100        110        120 
VRFRYFNSDG SEAAMCGNGI RCFSRYVVEE GYAGERLRVE TLAGILELEV KRENGWWVKV 

       130        140        150        160        170        180 
DMGKPKFGRE EIPAKTDVWG YEVEHDGRKF RIYAANTGVP HVAVFVDSLD FDIVPLARKI 

       190        200        210        220        230        240 
RYSEIFPEGT NVNFAKVDGD TITVRTYERG VEGETLSCGT GSVAVAAIAN RLGLTGSKVD 

       250        260        270        280 
VVTKGGLLKI ELTEDTAYMT GGASRVFDGI LRLNELRYDI

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE000782 Genomic DNA. Translation: AAB90492.1.
PIRC69343.
RefSeqNP_069581.1. NC_000917.1.

3D structure databases

ProteinModelPortalO29511.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1483964.
GenomeReviewsGene locus AF_0747 in contig AE000782_GR.
KEGGafu:AF0747.
NMPDRfig|224325.1.peg.740.
TIGRAF_0747.

Phylogenomic databases

HOGENOMHBG399442.
OMANTGVPHV.
PhylomeDBO29511.
ProtClustDBPRK00450.

Enzyme and pathway databases

BioCycAFUL224325:AF_0747-MONOMER.

Family and domain databases

HAMAPMF_00197. DAP_epimerase.
[Tree]
InterProIPR018510. DAP_epimerase_AS.
IPR001653. DAP_epimerase_DapF.
[Graphical view]
KOK01778.
PfamPF01678. DAP_epimerase. 2 hits.
[Graphical view]
TIGRFAMsTIGR00652. DapF. 1 hit.
PROSITEPS01326. DAP_EPIMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameDAPF_ARCFU
AccessionPrimary (citable) accession number: O29511
Entry history
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: January 1, 1998
Last modified: December 14, 2011
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

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