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O29494

- RL7A_ARCFU

UniProt

O29494 - RL7A_ARCFU

Protein

50S ribosomal protein L7Ae

Gene

rpl7ae

Organism
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 95 (01 Oct 2014)
      Sequence version 1 (01 Jan 1998)
      Previous versions | rss
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    Functioni

    Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.1 PublicationUniRule annotation

    GO - Molecular functioni

    1. ribonuclease P activity Source: UniProtKB-HAMAP
    2. rRNA binding Source: UniProtKB-KW
    3. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. ribosome biogenesis Source: InterPro
    2. translation Source: UniProtKB-HAMAP
    3. tRNA 5'-leader removal Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Biological processi

    tRNA processing

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciAFUL224325:GJBC-780-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L7AeUniRule annotation
    Alternative name(s):
    Ribosomal protein L8eUniRule annotation
    Gene namesi
    Name:rpl7aeUniRule annotation
    Ordered Locus Names:AF_0764
    OrganismiArchaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
    Taxonomic identifieri224325 [NCBI]
    Taxonomic lineageiArchaeaEuryarchaeotaArchaeoglobiArchaeoglobalesArchaeoglobaceaeArchaeoglobus
    ProteomesiUP000002199: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 11911950S ribosomal protein L7AePRO_0000136789Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit. Probably part of the RNase P complex.UniRule annotation

    Protein-protein interaction databases

    STRINGi224325.AF0764.

    Structurei

    Secondary structure

    1
    119
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi9 – 2517
    Beta strandi26 – 316
    Helixi32 – 409
    Beta strandi45 – 528
    Helixi56 – 583
    Turni59 – 613
    Helixi62 – 687
    Beta strandi73 – 775
    Helixi79 – 857
    Beta strandi93 – 997
    Helixi101 – 1033
    Helixi104 – 11512
    Turni116 – 1183

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1RLGX-ray2.70A/B1-119[»]
    4BW0X-ray2.33B2-119[»]
    4C4WX-ray2.95C/G2-119[»]
    ProteinModelPortaliO29494.
    SMRiO29494. Positions 2-118.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiO29494.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L7Ae family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1358.
    KOiK02936.
    OMAiRKGTNEV.

    Family and domain databases

    Gene3Di3.30.1330.30. 1 hit.
    HAMAPiMF_00326. Ribosomal_L7Ae_Arch.
    InterProiIPR029064. L30e-like.
    IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
    IPR018492. Ribosomal_L7Ae/L8/Nhp2.
    IPR022481. Ribosomal_L7Ae_arc.
    IPR004037. Ribosomal_L7Ae_CS.
    IPR000948. Ribosomal_L7Ae_prok.
    [Graphical view]
    PfamiPF01248. Ribosomal_L7Ae. 1 hit.
    [Graphical view]
    PRINTSiPR00881. L7ARS6FAMILY.
    PR00884. RIBOSOMALHS6.
    SUPFAMiSSF55315. SSF55315. 1 hit.
    TIGRFAMsiTIGR03677. rpl7ae. 1 hit.
    PROSITEiPS01082. RIBOSOMAL_L7AE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    O29494-1 [UniParc]FASTAAdd to Basket

    « Hide

    MYVRFEVPED MQNEALSLLE KVRESGKVKK GTNETTKAVE RGLAKLVYIA    50
    EDVDPPEIVA HLPLLCEEKN VPYIYVKSKN DLGRAVGIEV PCASAAIINE 100
    GELRKELGSL VEKIKGLQK 119
    Length:119
    Mass (Da):13,193
    Last modified:January 1, 1998 - v1
    Checksum:i9065A83C82207501
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE000782 Genomic DNA. Translation: AAB90466.1.
    PIRiD69345.
    RefSeqiNP_069598.1. NC_000917.1.

    Genome annotation databases

    EnsemblBacteriaiAAB90466; AAB90466; AF_0764.
    GeneIDi1483981.
    KEGGiafu:AF0764.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE000782 Genomic DNA. Translation: AAB90466.1 .
    PIRi D69345.
    RefSeqi NP_069598.1. NC_000917.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1RLG X-ray 2.70 A/B 1-119 [» ]
    4BW0 X-ray 2.33 B 2-119 [» ]
    4C4W X-ray 2.95 C/G 2-119 [» ]
    ProteinModelPortali O29494.
    SMRi O29494. Positions 2-118.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 224325.AF0764.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB90466 ; AAB90466 ; AF_0764 .
    GeneIDi 1483981.
    KEGGi afu:AF0764.

    Phylogenomic databases

    eggNOGi COG1358.
    KOi K02936.
    OMAi RKGTNEV.

    Enzyme and pathway databases

    BioCyci AFUL224325:GJBC-780-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei O29494.

    Family and domain databases

    Gene3Di 3.30.1330.30. 1 hit.
    HAMAPi MF_00326. Ribosomal_L7Ae_Arch.
    InterProi IPR029064. L30e-like.
    IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
    IPR018492. Ribosomal_L7Ae/L8/Nhp2.
    IPR022481. Ribosomal_L7Ae_arc.
    IPR004037. Ribosomal_L7Ae_CS.
    IPR000948. Ribosomal_L7Ae_prok.
    [Graphical view ]
    Pfami PF01248. Ribosomal_L7Ae. 1 hit.
    [Graphical view ]
    PRINTSi PR00881. L7ARS6FAMILY.
    PR00884. RIBOSOMALHS6.
    SUPFAMi SSF55315. SSF55315. 1 hit.
    TIGRFAMsi TIGR03677. rpl7ae. 1 hit.
    PROSITEi PS01082. RIBOSOMAL_L7AE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus."
      Klenk H.-P., Clayton R.A., Tomb J.-F., White O., Nelson K.E., Ketchum K.A., Dodson R.J., Gwinn M.L., Hickey E.K., Peterson J.D., Richardson D.L., Kerlavage A.R., Graham D.E., Kyrpides N.C., Fleischmann R.D., Quackenbush J., Lee N.H., Sutton G.G.
      , Gill S.R., Kirkness E.F., Dougherty B.A., McKenney K., Adams M.D., Loftus B.J., Peterson S.N., Reich C.I., McNeil L.K., Badger J.H., Glodek A., Zhou L., Overbeek R., Gocayne J.D., Weidman J.F., McDonald L.A., Utterback T.R., Cotton M.D., Spriggs T., Artiach P., Kaine B.P., Sykes S.M., Sadow P.W., D'Andrea K.P., Bowman C., Fujii C., Garland S.A., Mason T.M., Olsen G.J., Fraser C.M., Smith H.O., Woese C.R., Venter J.C.
      Nature 390:364-370(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126.
    2. "Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea."
      Rozhdestvensky T.S., Tang T.H., Tchirkova I.V., Brosius J., Bachellerie J.-P., Huettenhofer A.
      Nucleic Acids Res. 31:869-877(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION.
    3. "Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA."
      Moore T., Zhang Y., Fenley M.O., Li H.
      Structure 12:807-818(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.7 ANGSTROMS).

    Entry informationi

    Entry nameiRL7A_ARCFU
    AccessioniPrimary (citable) accession number: O29494
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 15, 1998
    Last sequence update: January 1, 1998
    Last modified: October 1, 2014
    This is version 95 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3