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Protein

30S ribosomal protein S2

Gene

rps2

Organism
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S2
Gene namesi
Name:rps2
Ordered Locus Names:AF_1133
OrganismiArchaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Taxonomic identifieri224325 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaArchaeoglobiArchaeoglobalesArchaeoglobaceaeArchaeoglobus
Proteomesi
  • UP000002199 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001343191 – 19730S ribosomal protein S2Add BLAST197

Interactioni

Protein-protein interaction databases

STRINGi224325.AF1133.

Structurei

Secondary structure

1197
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi12 – 18Combined sources7
Turni19 – 21Combined sources3
Turni29 – 31Combined sources3
Helixi32 – 34Combined sources3
Beta strandi35 – 38Combined sources4
Beta strandi44 – 46Combined sources3
Helixi48 – 62Combined sources15
Helixi67 – 69Combined sources3
Beta strandi70 – 74Combined sources5
Helixi77 – 79Combined sources3
Helixi80 – 90Combined sources11
Beta strandi93 – 98Combined sources6
Turni101 – 105Combined sources5
Beta strandi116 – 121Combined sources6
Turni123 – 126Combined sources4
Helixi127 – 135Combined sources9
Beta strandi140 – 144Combined sources5
Beta strandi154 – 159Combined sources6
Helixi164 – 182Combined sources19
Helixi190 – 193Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VI5X-ray2.65A/B/C/D3-197[»]
1VI6X-ray1.95A/B/C/D3-197[»]
ProteinModelPortaliO29132.
SMRiO29132.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO29132.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S2P family.Curated

Phylogenomic databases

eggNOGiarCOG04245. Archaea.
COG0052. LUCA.
KOiK02967.
OMAiVSVRQYG.

Family and domain databases

CDDicd01425. RPS2. 1 hit.
HAMAPiMF_00291_A. Ribosomal_S2_A. 1 hit.
MF_00291_B. Ribosomal_S2_B. 1 hit.
InterProiIPR001865. Ribosomal_S2.
IPR023454. Ribosomal_S2_arc.
IPR005706. Ribosomal_S2_bac/mit/plastid.
IPR018130. Ribosomal_S2_CS.
IPR005707. Ribosomal_S2_euk/arc.
IPR023591. Ribosomal_S2_flav_dom.
[Graphical view]
PANTHERiPTHR11489. PTHR11489. 1 hit.
PfamiPF00318. Ribosomal_S2. 2 hits.
[Graphical view]
PRINTSiPR00395. RIBOSOMALS2.
SUPFAMiSSF52313. SSF52313. 1 hit.
TIGRFAMsiTIGR01012. uS2_euk_arch. 1 hit.
PROSITEiPS00963. RIBOSOMAL_S2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O29132-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMEKEYEYLV PPDDYLAAGV HIGTQIKTGD MKKFIFKVRQ DGLYVLDIRK
60 70 80 90 100
LDERIRVAAK FLSRYEPSKI LLVAARQYAH KPVQMFSKVV GSDYIVGRFI
110 120 130 140 150
PGTLTNPMLS EYREPEVVFV NDPAIDKQAV SEATAVGIPV VALCDSNNSS
160 170 180 190
ADVDLVIPTN NKGRRALAIV YWLLAREIAK IRGQDFTYSI EDFEAEL
Length:197
Mass (Da):22,221
Last modified:January 1, 1998 - v1
Checksum:i7E9D47D2D8A29F57
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000782 Genomic DNA. Translation: AAB90111.1.
PIRiD69391.
RefSeqiWP_010878629.1. NC_000917.1.

Genome annotation databases

EnsemblBacteriaiAAB90111; AAB90111; AF_1133.
GeneIDi24794739.
KEGGiafu:AF_1133.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000782 Genomic DNA. Translation: AAB90111.1.
PIRiD69391.
RefSeqiWP_010878629.1. NC_000917.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VI5X-ray2.65A/B/C/D3-197[»]
1VI6X-ray1.95A/B/C/D3-197[»]
ProteinModelPortaliO29132.
SMRiO29132.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224325.AF1133.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB90111; AAB90111; AF_1133.
GeneIDi24794739.
KEGGiafu:AF_1133.

Phylogenomic databases

eggNOGiarCOG04245. Archaea.
COG0052. LUCA.
KOiK02967.
OMAiVSVRQYG.

Miscellaneous databases

EvolutionaryTraceiO29132.

Family and domain databases

CDDicd01425. RPS2. 1 hit.
HAMAPiMF_00291_A. Ribosomal_S2_A. 1 hit.
MF_00291_B. Ribosomal_S2_B. 1 hit.
InterProiIPR001865. Ribosomal_S2.
IPR023454. Ribosomal_S2_arc.
IPR005706. Ribosomal_S2_bac/mit/plastid.
IPR018130. Ribosomal_S2_CS.
IPR005707. Ribosomal_S2_euk/arc.
IPR023591. Ribosomal_S2_flav_dom.
[Graphical view]
PANTHERiPTHR11489. PTHR11489. 1 hit.
PfamiPF00318. Ribosomal_S2. 2 hits.
[Graphical view]
PRINTSiPR00395. RIBOSOMALS2.
SUPFAMiSSF52313. SSF52313. 1 hit.
TIGRFAMsiTIGR01012. uS2_euk_arch. 1 hit.
PROSITEiPS00963. RIBOSOMAL_S2_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS2_ARCFU
AccessioniPrimary (citable) accession number: O29132
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: January 1, 1998
Last modified: November 2, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.