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Protein

UPF0200/UPF0201 protein AF_1395

Gene

AF_1395

Organism
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi12 – 19ATPBy similarity8

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0200/UPF0201 protein AF_1395
Gene namesi
Ordered Locus Names:AF_1395
OrganismiArchaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Taxonomic identifieri224325 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaArchaeoglobiArchaeoglobalesArchaeoglobaceaeArchaeoglobus
Proteomesi
  • UP000002199 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000945221 – 323UPF0200/UPF0201 protein AF_1395Add BLAST323

Interactioni

Protein-protein interaction databases

STRINGi224325.AF1395.

Structurei

Secondary structure

1323
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi189 – 196Combined sources8
Helixi203 – 213Combined sources11
Beta strandi218 – 221Combined sources4
Beta strandi226 – 231Combined sources6
Helixi235 – 243Combined sources9
Helixi248 – 256Combined sources9
Beta strandi260 – 267Combined sources8
Helixi269 – 272Combined sources4
Turni273 – 275Combined sources3
Beta strandi289 – 298Combined sources10
Helixi300 – 307Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3C9GX-ray2.30A/B183-323[»]
ProteinModelPortaliO28876.
SMRiO28876.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO28876.

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni1 – 185UPF0200Add BLAST185
Regioni186 – 323UPF0201Add BLAST138

Sequence similaritiesi

In the N-terminal section; belongs to the UPF0200 family.Curated
In the C-terminal section; belongs to the UPF0201 family.Curated

Phylogenomic databases

eggNOGiarCOG01045. Archaea.
COG0237. LUCA.
COG1931. LUCA.
OMAiAKRCIPK.

Family and domain databases

Gene3Di3.30.1440.10. 1 hit.
3.40.50.300. 1 hit.
HAMAPiMF_01111. UPF0200. 1 hit.
MF_01112. UPF0201. 1 hit.
InterProiIPR022970. NTP_hydrolase-rel.
IPR027417. P-loop_NTPase.
IPR022803. Ribosomal_L5_domain.
IPR002739. UPF0201.
[Graphical view]
PfamiPF01877. RNA_binding. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF55282. SSF55282. 1 hit.

Sequencei

Sequence statusi: Complete.

O28876-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLEMKVIAF VGYPLSGKST AAEVARELGL PVVVMGDVVR EEAARRGLEL
60 70 80 90 100
TDENLGKVAR ELREKEGMDA IAKRCIPKIR ELLKEHGVVV VDGIRGVAEV
110 120 130 140 150
ERFKKAFGDD FVLIAIECPL EVRFERVKMR KRSDDVSSIE ELKERDRREE
160 170 180 190 200
SWGLKEAMEM ADFTVENTGS YEDFVEKIRQ ILLKLAKNVE IEIRTKIHPT
210 220 230 240 250
ESEDKVLKAI RNIFPDAEIE ISEEGEVYGR AYSLDRFREL LRKQRILDTA
260 270 280 290 300
RSEILKGRNG KEVTIYLNKQ TATVSRINFC DENAVLSPIK VTFRLNNIPF
310 320
SRFLDYIAPE TKDGRPVKEI DKL
Length:323
Mass (Da):37,002
Last modified:January 1, 1998 - v1
Checksum:i68193A978D6F2AA2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000782 Genomic DNA. Translation: AAB89852.1.
PIRiB69424.

Genome annotation databases

EnsemblBacteriaiAAB89852; AAB89852; AF_1395.
KEGGiafu:AF_1395.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000782 Genomic DNA. Translation: AAB89852.1.
PIRiB69424.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3C9GX-ray2.30A/B183-323[»]
ProteinModelPortaliO28876.
SMRiO28876.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224325.AF1395.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB89852; AAB89852; AF_1395.
KEGGiafu:AF_1395.

Phylogenomic databases

eggNOGiarCOG01045. Archaea.
COG0237. LUCA.
COG1931. LUCA.
OMAiAKRCIPK.

Miscellaneous databases

EvolutionaryTraceiO28876.

Family and domain databases

Gene3Di3.30.1440.10. 1 hit.
3.40.50.300. 1 hit.
HAMAPiMF_01111. UPF0200. 1 hit.
MF_01112. UPF0201. 1 hit.
InterProiIPR022970. NTP_hydrolase-rel.
IPR027417. P-loop_NTPase.
IPR022803. Ribosomal_L5_domain.
IPR002739. UPF0201.
[Graphical view]
PfamiPF01877. RNA_binding. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF55282. SSF55282. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY1395_ARCFU
AccessioniPrimary (citable) accession number: O28876
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 27, 2002
Last sequence update: January 1, 1998
Last modified: November 2, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.