Reviewed,
UniProtKB/Swiss-Prot O28185 (PTH_ARCFU)
Last modified
November 3, 2009.
Version 61.
History...
Clusters with 100%,
90%,
50% identity |
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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents
Names and origin
| Protein names | Recommended name: Peptidyl-tRNA hydrolase Short name=PTH EC=3.1.1.29 | ||||
| Gene names |
| ||||
| Organism | Archaeoglobus fulgidus [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 2234 [NCBI] | ||||
| Taxonomic lineage | Archaea › Euryarchaeota › Archaeoglobi › Archaeoglobales › Archaeoglobaceae › Archaeoglobus |
Protein attributes
| Sequence length | 115 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis By similarity. |
| Catalytic activity | N-substituted aminoacyl-tRNA + H2O = N-substituted amino acid + tRNA. HAMAP MF_00628 |
| Subcellular location | Cytoplasm By similarity. |
| Sequence similarities | Belongs to the PTH2 family. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cytoplasm |
| Molecular function | Hydrolase |
| Technical term | 3D-structure Complete proteome |
| Gene Ontology (GO) | |
| Biological process | translation Inferred from electronic annotation. Source: HAMAP |
| Cellular component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | aminoacyl-tRNA hydrolase activity Inferred from electronic annotation. Source: HAMAP |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 115 | 115 | Peptidyl-tRNA hydrolase HAMAP MF_00628 | PRO_0000120288 | |||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||
| Beta strand | 4 – 10 | 7 | |||||||||||||||||||||||||
| Helix | 19 – 36 | 18 | |||||||||||||||||||||||||
| Helix | 39 – 42 | 4 | |||||||||||||||||||||||||
| Helix | 44 – 46 | 3 | |||||||||||||||||||||||||
| Beta strand | 48 – 54 | 7 | |||||||||||||||||||||||||
| Helix | 58 – 70 | 13 | |||||||||||||||||||||||||
| Beta strand | 75 – 78 | 4 | |||||||||||||||||||||||||
| Beta strand | 92 – 99 | 8 | |||||||||||||||||||||||||
| Helix | 101 – 108 | 8 | |||||||||||||||||||||||||
Sequences
References
| [1] | "The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus." Klenk H.-P., Clayton R.A., Tomb J.-F., White O., Nelson K.E., Ketchum K.A., Dodson R.J., Gwinn M.L., Hickey E.K., Peterson J.D., Richardson D.L., Kerlavage A.R., Graham D.E., Kyrpides N.C., Fleischmann R.D., Quackenbush J., Lee N.H., Sutton G.G. Venter J.C.Nature 390:364-370(1997) [PubMed: 9389475] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AE000782 Genomic DNA. Translation: AAB89160.1. | |||||||||||||||||||
| PIR | G69511. | ||||||||||||||||||
| RefSeq | NP_070920.1. | ||||||||||||||||||
3D structure databases | |||||||||||||||||||
| |||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||
Genome annotation databases | |||||||||||||||||||
| GeneID | 1485324. | ||||||||||||||||||
| GenomeReviews | Gene locus AF_2095 in contig AE000782_GR. | ||||||||||||||||||
| KEGG | afu:AF2095. | ||||||||||||||||||
| NMPDR | fig|224325.1.peg.2081. | ||||||||||||||||||
| TIGR | AF_2095. | ||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||
| HOGENOM | O28185. | ||||||||||||||||||
| OMA | IQRRNPE. | ||||||||||||||||||
Enzyme and pathway databases | |||||||||||||||||||
| BioCyc | AFUL224325:AF_2095-MON. | ||||||||||||||||||
Family and domain databases | |||||||||||||||||||
| HAMAP | MF_00628. [Tree] | ||||||||||||||||||
| InterPro | IPR002833. Pep_tRNA_hydro_PTH2. [Graphical view] | ||||||||||||||||||
| Pfam | PF01981. PTH2. 1 hit. [Graphical view] | ||||||||||||||||||
| ProDom | PD010667. UPF0099. 1 hit. [Graphical view] [Entries sharing at least one domain] | ||||||||||||||||||
| TIGRFAMs | TIGR00283. Pep_tRNA_hydro_PTH2. 1 hit. | ||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||
Entry information
| Entry name | PTH_ARCFU | ||||||||
| Accession | Primary (citable) accession number: O28185 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes) | ||||||||
Relevant documents
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

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