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Protein
Submitted name:

Conserved protein

Gene

MTH_1221

Organism
Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (Methanobacterium thermoautotrophicum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciMTHE187420:GJNM-1223-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Conserved proteinImported
Gene namesi
Ordered Locus Names:MTH_1221Imported
OrganismiMethanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (Methanobacterium thermoautotrophicum)Imported
Taxonomic identifieri187420 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanobacteriaMethanobacterialesMethanobacteriaceaeMethanothermobacter
Proteomesi
  • UP000005223 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi187420.MTH1221.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
5D1OX-ray2.65A/B4-381[»]
5D1PX-ray2.20A/B4-381[»]
ProteinModelPortaliO27289.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini91 – 240150RNA_ligaseInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiarCOG04218. Archaea.
COG1423. LUCA.
KOiK07468.
OMAiICPFTTK.

Family and domain databases

InterProiIPR021122. RNA_ligase_dom_REL/Rnl2.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF09414. RNA_ligase. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

Sequencei

Sequence statusi: Complete.

O27289-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNSMNSDIPF DLIQERTGVP SSRLKVAFAR GSLRLLESAG MQALLFKKPL
60 70 80 90 100
GDLEAGTVIY LGDETEVIRG FPKIRRTLLL SPTIQEHFRD RVAVEEKMNG
110 120 130 140 150
YNVRIACLSS GETVALTRGG HVCPFTTRKA QELLDLSEFF REHPDLVICG
160 170 180 190 200
EMIGRDNPYV SQDYPEVGPL GFRVFDLREK NTNRPLPVEE RRALLDSYGL
210 220 230 240 250
PNVRLFGVYP IEEAASEVAD IIRALGMAGR EGVVMKDPSM EVPPLKYTSS
260 270 280 290 300
QAHARELAYA FSYPFDFGRP FFFSRVIREG FQAYELDESD DETRERARRL
310 320 330 340 350
GEAIIYPMLE RIKSISAGEA AYEDTVIDVE DREAAEEFIR HLVRLGVSAT
360 370 380
LADYRDGRAT IRRFYQSTTD RINNYLKGGL Y
Length:381
Mass (Da):43,146
Last modified:January 1, 1998 - v1
Checksum:i1843BF4D52E45A1B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000666 Genomic DNA. Translation: AAB85710.1.
PIRiB69030.

Genome annotation databases

EnsemblBacteriaiAAB85710; AAB85710; MTH_1221.
KEGGimth:MTH_1221.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000666 Genomic DNA. Translation: AAB85710.1.
PIRiB69030.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
5D1OX-ray2.65A/B4-381[»]
5D1PX-ray2.20A/B4-381[»]
ProteinModelPortaliO27289.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi187420.MTH1221.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB85710; AAB85710; MTH_1221.
KEGGimth:MTH_1221.

Phylogenomic databases

eggNOGiarCOG04218. Archaea.
COG1423. LUCA.
KOiK07468.
OMAiICPFTTK.

Enzyme and pathway databases

BioCyciMTHE187420:GJNM-1223-MONOMER.

Family and domain databases

InterProiIPR021122. RNA_ligase_dom_REL/Rnl2.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF09414. RNA_ligase. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta HImported.
  2. "Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis."
    Gu H., Yoshinari S., Ghosh R., Ignatochkina A.V., Gollnick P.D., Murakami K.S., Ho C.K.
    Nucleic Acids Res. 44:2337-2347(2016) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) OF 4-381.

Entry informationi

Entry nameiO27289_METTH
AccessioniPrimary (citable) accession number: O27289
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: July 6, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.