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Protein

Ribosome maturation protein SDO1 homolog

Gene

MTH_685

Organism
Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (Methanobacterium thermoautotrophicum)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome maturation protein SDO1 homolog
Gene namesi
Ordered Locus Names:MTH_685
OrganismiMethanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (Methanobacterium thermoautotrophicum)
Taxonomic identifieri187420 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanobacteriaMethanobacterialesMethanobacteriaceaeMethanothermobacter
Proteomesi
  • UP000005223 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001237701 – 232Ribosome maturation protein SDO1 homologAdd BLAST232

Interactioni

Protein-protein interaction databases

STRINGi187420.MTH685.

Structurei

Secondary structure

1232
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni4 – 6Combined sources3
Beta strandi8 – 14Combined sources7
Beta strandi17 – 23Combined sources7
Helixi25 – 32Combined sources8
Helixi40 – 43Combined sources4
Beta strandi44 – 47Combined sources4
Beta strandi50 – 52Combined sources3
Turni53 – 56Combined sources4
Helixi61 – 68Combined sources8
Helixi73 – 83Combined sources11
Beta strandi84 – 87Combined sources4
Helixi90 – 111Combined sources22
Turni115 – 117Combined sources3
Helixi123 – 132Combined sources10
Beta strandi139 – 141Combined sources3
Helixi143 – 154Combined sources12
Turni155 – 157Combined sources3
Beta strandi164 – 171Combined sources8
Helixi173 – 175Combined sources3
Helixi176 – 186Combined sources11
Beta strandi188 – 194Combined sources7
Beta strandi200 – 207Combined sources8
Helixi208 – 210Combined sources3
Helixi211 – 221Combined sources11
Turni222 – 224Combined sources3
Beta strandi227 – 230Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2WBMX-ray1.75A/B1-232[»]
ProteinModelPortaliO26781.
SMRiO26781.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO26781.

Family & Domainsi

Sequence similaritiesi

Belongs to the SDO1/SBDS family.Curated

Phylogenomic databases

eggNOGiarCOG04187. Archaea.
COG1500. LUCA.
KOiK14574.
OMAiAVNPQMD.

Family and domain databases

Gene3Di3.30.1250.10. 1 hit.
InterProiIPR009022. EFG_III-V.
IPR018978. Ribosome_mat_SBDS_C.
IPR018023. Ribosome_mat_SBDS_CS.
IPR019783. Ribosome_mat_SBDS_N.
IPR002140. Sdo1/SBDS.
[Graphical view]
PfamiPF01172. SBDS. 1 hit.
PF09377. SBDS_C. 1 hit.
[Graphical view]
SUPFAMiSSF54980. SSF54980. 1 hit.
SSF89895. SSF89895. 1 hit.
TIGRFAMsiTIGR00291. RNA_SBDS. 1 hit.
PROSITEiPS01267. UPF0023. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O26781-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVSLEDAVIA RLESHGERFE VLVDPDLAAE FRREDSDVSV EDVLAVQEVF
60 70 80 90 100
RDARKGDKAS EEAMRKVFET ADPLEVTPVI LRRGTIQLTA EQRRQMIEDK
110 120 130 140 150
RLKIINKIAR EAINPQNGLP HPPKRIEKAM EEARVHVDPF KTVDEQVNIV
160 170 180 190 200
LKAIRTKIPI KFEKVRVAIK IPGERAGSAY GVISNFGKIT NEEWQNDGSW
210 220 230
IAVVEIPGGL QDSFYQKLSE LTGGNVETRL IK
Length:232
Mass (Da):26,193
Last modified:January 1, 1998 - v1
Checksum:i80ACC4306A5BF1AF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000666 Genomic DNA. Translation: AAB85190.1.
PIRiC69191.
RefSeqiWP_010876324.1. NC_000916.1.

Genome annotation databases

EnsemblBacteriaiAAB85190; AAB85190; MTH_685.
GeneIDi24853827.
KEGGimth:MTH_685.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000666 Genomic DNA. Translation: AAB85190.1.
PIRiC69191.
RefSeqiWP_010876324.1. NC_000916.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2WBMX-ray1.75A/B1-232[»]
ProteinModelPortaliO26781.
SMRiO26781.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi187420.MTH685.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB85190; AAB85190; MTH_685.
GeneIDi24853827.
KEGGimth:MTH_685.

Phylogenomic databases

eggNOGiarCOG04187. Archaea.
COG1500. LUCA.
KOiK14574.
OMAiAVNPQMD.

Miscellaneous databases

EvolutionaryTraceiO26781.

Family and domain databases

Gene3Di3.30.1250.10. 1 hit.
InterProiIPR009022. EFG_III-V.
IPR018978. Ribosome_mat_SBDS_C.
IPR018023. Ribosome_mat_SBDS_CS.
IPR019783. Ribosome_mat_SBDS_N.
IPR002140. Sdo1/SBDS.
[Graphical view]
PfamiPF01172. SBDS. 1 hit.
PF09377. SBDS_C. 1 hit.
[Graphical view]
SUPFAMiSSF54980. SSF54980. 1 hit.
SSF89895. SSF89895. 1 hit.
TIGRFAMsiTIGR00291. RNA_SBDS. 1 hit.
PROSITEiPS01267. UPF0023. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSDO1_METTH
AccessioniPrimary (citable) accession number: O26781
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: January 1, 1998
Last modified: November 2, 2016
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.