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Protein

Ribosome maturation protein SDO1 homolog

Gene

MTH_685

Organism
Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (Methanobacterium thermoautotrophicum)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciMTHE187420:GJNM-687-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome maturation protein SDO1 homolog
Gene namesi
Ordered Locus Names:MTH_685
OrganismiMethanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (Methanobacterium thermoautotrophicum)
Taxonomic identifieri187420 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanobacteriaMethanobacterialesMethanobacteriaceaeMethanothermobacter
Proteomesi
  • UP000005223 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 232232Ribosome maturation protein SDO1 homologPRO_0000123770Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi187420.MTH685.

Structurei

Secondary structure

1
232
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni4 – 63Combined sources
Beta strandi8 – 147Combined sources
Beta strandi17 – 237Combined sources
Helixi25 – 328Combined sources
Helixi40 – 434Combined sources
Beta strandi44 – 474Combined sources
Beta strandi50 – 523Combined sources
Turni53 – 564Combined sources
Helixi61 – 688Combined sources
Helixi73 – 8311Combined sources
Beta strandi84 – 874Combined sources
Helixi90 – 11122Combined sources
Turni115 – 1173Combined sources
Helixi123 – 13210Combined sources
Beta strandi139 – 1413Combined sources
Helixi143 – 15412Combined sources
Turni155 – 1573Combined sources
Beta strandi164 – 1718Combined sources
Helixi173 – 1753Combined sources
Helixi176 – 18611Combined sources
Beta strandi188 – 1947Combined sources
Beta strandi200 – 2078Combined sources
Helixi208 – 2103Combined sources
Helixi211 – 22111Combined sources
Turni222 – 2243Combined sources
Beta strandi227 – 2304Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2WBMX-ray1.75A/B1-232[»]
ProteinModelPortaliO26781.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO26781.

Family & Domainsi

Sequence similaritiesi

Belongs to the SDO1/SBDS family.Curated

Phylogenomic databases

eggNOGiarCOG04187. Archaea.
COG1500. LUCA.
KOiK14574.
OMAiAVNPQMD.

Family and domain databases

Gene3Di3.30.1250.10. 1 hit.
InterProiIPR009022. EFG_III-V.
IPR018978. Ribosome_mat_SBDS_C.
IPR018023. Ribosome_mat_SBDS_CS.
IPR019783. Ribosome_mat_SBDS_N.
IPR002140. Sdo1/SBDS.
[Graphical view]
PfamiPF01172. SBDS. 1 hit.
PF09377. SBDS_C. 1 hit.
[Graphical view]
SUPFAMiSSF54980. SSF54980. 1 hit.
SSF89895. SSF89895. 1 hit.
TIGRFAMsiTIGR00291. RNA_SBDS. 1 hit.
PROSITEiPS01267. UPF0023. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O26781-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVSLEDAVIA RLESHGERFE VLVDPDLAAE FRREDSDVSV EDVLAVQEVF
60 70 80 90 100
RDARKGDKAS EEAMRKVFET ADPLEVTPVI LRRGTIQLTA EQRRQMIEDK
110 120 130 140 150
RLKIINKIAR EAINPQNGLP HPPKRIEKAM EEARVHVDPF KTVDEQVNIV
160 170 180 190 200
LKAIRTKIPI KFEKVRVAIK IPGERAGSAY GVISNFGKIT NEEWQNDGSW
210 220 230
IAVVEIPGGL QDSFYQKLSE LTGGNVETRL IK
Length:232
Mass (Da):26,193
Last modified:January 1, 1998 - v1
Checksum:i80ACC4306A5BF1AF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000666 Genomic DNA. Translation: AAB85190.1.
PIRiC69191.
RefSeqiWP_010876324.1. NC_000916.1.

Genome annotation databases

EnsemblBacteriaiAAB85190; AAB85190; MTH_685.
GeneIDi24853827.
KEGGimth:MTH_685.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000666 Genomic DNA. Translation: AAB85190.1.
PIRiC69191.
RefSeqiWP_010876324.1. NC_000916.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2WBMX-ray1.75A/B1-232[»]
ProteinModelPortaliO26781.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi187420.MTH685.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB85190; AAB85190; MTH_685.
GeneIDi24853827.
KEGGimth:MTH_685.

Phylogenomic databases

eggNOGiarCOG04187. Archaea.
COG1500. LUCA.
KOiK14574.
OMAiAVNPQMD.

Enzyme and pathway databases

BioCyciMTHE187420:GJNM-687-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO26781.

Family and domain databases

Gene3Di3.30.1250.10. 1 hit.
InterProiIPR009022. EFG_III-V.
IPR018978. Ribosome_mat_SBDS_C.
IPR018023. Ribosome_mat_SBDS_CS.
IPR019783. Ribosome_mat_SBDS_N.
IPR002140. Sdo1/SBDS.
[Graphical view]
PfamiPF01172. SBDS. 1 hit.
PF09377. SBDS_C. 1 hit.
[Graphical view]
SUPFAMiSSF54980. SSF54980. 1 hit.
SSF89895. SSF89895. 1 hit.
TIGRFAMsiTIGR00291. RNA_SBDS. 1 hit.
PROSITEiPS01267. UPF0023. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H.
  2. "Conformational flexibility and molecular interactions of an archaeal homologue of the Shwachman-Bodian-Diamond syndrome protein."
    Ng C.L., Waterman D.G., Koonin E.V., Walters A.D., Chong J.P., Isupov M.N., Lebedev A.A., Bunka D.H., Stockley P.G., Ortiz-Lombardia M., Antson A.A.
    BMC Struct. Biol. 9:32-32(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.75 ANGSTROMS).

Entry informationi

Entry nameiSDO1_METTH
AccessioniPrimary (citable) accession number: O26781
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: January 1, 1998
Last modified: July 6, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.