Reviewed, UniProtKB/Swiss-Prot O26745 (RUXX_METTH)

Names and origin

Protein names

Recommended name:
    Putative snRNP Sm-like protein

Gene names

Ordered Locus Names:

MTH_649

Organism

Methanobacterium thermoautotrophicum [Complete proteome] [HAMAP]

Taxonomic identifier

187420 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanobacteria › Methanobacteriales › Methanobacteriaceae › Methanothermobacter

Protein attributes

Sequence length	81 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities

Belongs to the snRNP Sm proteins family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Cellular component	ribonucleoprotein complex Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 81

81

Putative snRNP Sm-like protein HAMAP MF_00257

PRO_0000125595

Secondary structure

1

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81

Helix Strand Turn

Details...

Helix

16 – 19

4

Turn

20 – 23

4

Beta strand

24 – 30

7

Turn

31 – 33

3

Beta strand

34 – 43

10

Beta strand

49 – 58

10

Beta strand

61 – 71

11

Helix

73 – 75

3

Beta strand

76 – 80

5

Sequences

	Sequence		Length	Mass (Da)
	O26745-1 [UniParc]. Last modified January 1, 1998. Version 1. Checksum: C1C69E8957C50978	FASTA	81	9,061
	10 20 30 40 50 60 MIDVSSQRVN VQRPLDALGN SLNSPVIIKL KGDREFRGVL KSFDLHMNLV LNDAEELEDG 70 80 EVTRRLGTVL IRGDNIVYIS P

References

[1]

"Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics." Smith D.R., Doucette-Stamm L.A., Deloughery C., Lee H.-M., Dubois J., Aldredge T., Bashirzadeh R., Blakely D., Cook R., Gilbert K., Harrison D., Hoang L., Keagle P., Lumm W., Pothier B., Qiu D., Spadafora R., Vicare R. , Wang Y., Wierzbowski J., Gibson R., Jiwani N., Caruso A., Bush D., Safer H., Patwell D., Prabhakar S., McDougall S., Shimer G., Goyal A., Pietrovski S., Church G.M., Daniels C.J., Mao J.-I., Rice P., Noelling J., Reeve J.N. J. Bacteriol. 179:7135-7155(1997) [PubMed: 9371463] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Delta H.

+

Additional computationally mapped references.

Cross-references

Sequence databases

EMBLGenBankDDBJ

AE000666 Genomic DNA. Translation: AAB85154.1.

PIR

C69186.

RefSeq

NP_275791.1.

3D structure databases

PDBPDBe

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1I81	X-ray	2.00	A/B/C/D/E/F/G	2-81	[»]
1JBM	X-ray	1.85	A/B/C/D/E/F/G	1-80	[»]
1JRI	X-ray	2.80	A/B/C/D/E/F/G/H/I/J/K/L/M/N	1-80	[»]
1LOJ	X-ray	1.90	A/B/C/D/E/F/G/H/I/J/K/L/M/N	1-80	[»]
1MGQ	X-ray	1.70	A/B/C/D/E/F/G	2-81	[»]

ModBase

Search...

Genome annotation databases

GeneID

1470610.

GenomeReviews

Gene locus MTH_649 in contig AE000666_GR.

KEGG

mth:MTH649.

NMPDR

fig|187420.1.peg.646.

Organism-specific databases

CMR

Search...

Phylogenomic databases

HOGENOM

O26745.

OMA

O26745. IRGDNVI.

Enzyme and pathway databases

BioCyc

MTHE187420:MTH649-MON.

Family and domain databases

HAMAP

MF_00257.
[Tree]

InterPro

IPR006649. Euk_arc_LSM_core.
IPR001163. LSM_snRNP_core.
[Graphical view]

Pfam

PF01423. LSM. 1 hit.
[Graphical view]

ProDom

PD020287. snRNP. 1 hit.
[Graphical view] [Entries sharing at least one domain]

SMART

SM00651. Sm. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

RUXX_METTH

Accession

Primary (citable) accession number: O26745

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 15, 1999
Last sequence update:	January 1, 1998
Last modified:	May 5, 2009
This is version 59 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)