O26745 (RUXX_METTH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Putative snRNP Sm-like protein

Gene names

Ordered Locus Names:

MTH_649

Organism

Methanobacterium thermoautotrophicum (strain Delta H)

Taxonomic identifier

187420 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanobacteria › Methanobacteriales › Methanobacteriaceae › Methanothermobacter

Protein attributes

Sequence length	81 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the snRNP Sm proteins family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein
Technical term	3D-structure Complete proteome Reference proteome
Gene Ontology (GO)
Cellular component	ribonucleoprotein complex Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 81

81

Putative snRNP Sm-like protein HAMAP MF_00257

PRO_0000125595

Secondary structure

1

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81

Helix Strand Turn

Details...

Helix

16 – 19

4

Turn

20 – 23

4

Beta strand

24 – 30

7

Turn

31 – 33

3

Beta strand

34 – 43

10

Beta strand

49 – 58

10

Beta strand

61 – 71

11

Helix

73 – 75

3

Beta strand

76 – 80

5

Sequences

	Sequence		Length	Mass (Da)
	O26745 [UniParc]. Last modified January 1, 1998. Version 1. Checksum: C1C69E8957C50978	FASTA	81	9,061
	10 20 30 40 50 60 MIDVSSQRVN VQRPLDALGN SLNSPVIIKL KGDREFRGVL KSFDLHMNLV LNDAEELEDG 70 80 EVTRRLGTVL IRGDNIVYIS P

References

[1]

"Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics." Smith D.R., Doucette-Stamm L.A., Deloughery C., Lee H.-M., Dubois J., Aldredge T., Bashirzadeh R., Blakely D., Cook R., Gilbert K., Harrison D., Hoang L., Keagle P., Lumm W., Pothier B., Qiu D., Spadafora R., Vicare R. , Wang Y., Wierzbowski J., Gibson R., Jiwani N., Caruso A., Bush D., Safer H., Patwell D., Prabhakar S., McDougall S., Shimer G., Goyal A., Pietrovski S., Church G.M., Daniels C.J., Mao J.-I., Rice P., Noelling J., Reeve J.N. J. Bacteriol. 179:7135-7155(1997) [PubMed: 9371463] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Delta H.

+

Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE000666 Genomic DNA. Translation: AAB85154.1.

PIR

C69186.

RefSeq

NP_275791.1. NC_000916.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1I81	X-ray	2.00	A/B/C/D/E/F/G	2-81	[»]
1JBM	X-ray	1.85	A/B/C/D/E/F/G	1-80	[»]
1JRI	X-ray	2.80	A/B/C/D/E/F/G/H/I/J/K/L/M/N	1-80	[»]
1LOJ	X-ray	1.90	A/B/C/D/E/F/G/H/I/J/K/L/M/N	1-80	[»]
1MGQ	X-ray	1.70	A/B/C/D/E/F/G	2-81	[»]

ProteinModelPortal

O26745.

SMR

O26745. Positions 8-81.

ModBase

Search...

Protein-protein interaction databases

STRING

O26745.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

1470610.

GenomeReviews

Gene locus MTH_649 in contig AE000666_GR.

KEGG

mth:MTH649.

NMPDR

fig|187420.1.peg.646.

Phylogenomic databases

eggNOG

arNOG12694.

HOGENOM

HBG749684.

OMA

GYDVHMN.

PhylomeDB

O26745.

ProtClustDB

PRK00737.

Enzyme and pathway databases

BioCyc

MTHE187420:MTH649-MONOMER.

Family and domain databases

HAMAP

MF_00257. Lsm_RuxX.
[Tree]

InterPro

IPR010920. LSM-related_domain.
IPR001163. LSM_domain.
IPR006649. LSM_domain_euk/arc.
IPR022901. snRNP_Sm-like_arc.
[Graphical view]

KO

K04796.

Pfam

PF01423. LSM. 1 hit.
[Graphical view]

SMART

SM00651. Sm. 1 hit.
[Graphical view]

SUPFAM

SSF50182. Sm_like_riboprot. 1 hit.

ProtoNet

Search...

Entry information

Entry name

RUXX_METTH

Accession

Primary (citable) accession number: O26745

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 15, 1999
Last sequence update:	January 1, 1998
Last modified:	November 16, 2011
This is version 73 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program