Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

O25898

- EXBD_HELPY

UniProt

O25898 - EXBD_HELPY

Protein

Biopolymer transport protein ExbD

Gene

exbD

Organism
Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates.By similarity

    GO - Molecular functioni

    1. transporter activity Source: InterPro

    GO - Biological processi

    1. protein transport Source: UniProtKB-KW

    Keywords - Biological processi

    Protein transport, Transport

    Enzyme and pathway databases

    BioCyciHPY:HP1340-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Biopolymer transport protein ExbD
    Gene namesi
    Name:exbD
    Ordered Locus Names:HP_1340
    OrganismiHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
    Taxonomic identifieri85962 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
    ProteomesiUP000000429: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. plasma membrane Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cell inner membrane, Cell membrane, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 129129Biopolymer transport protein ExbDPRO_0000129122Add
    BLAST

    Proteomic databases

    PRIDEiO25898.

    Interactioni

    Subunit structurei

    The accessory proteins ExbB and ExbD seem to form a complex with TonB.By similarity

    Protein-protein interaction databases

    DIPiDIP-3143N.
    IntActiO25898. 1 interaction.
    MINTiMINT-175819.
    STRINGi85962.HP1340.

    Structurei

    3D structure databases

    ProteinModelPortaliO25898.
    ModBaseiSearch...
    MobiDBiSearch...

    Topological domain

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Topological domaini1 – 1212CytoplasmicSequence AnalysisAdd
    BLAST
    Topological domaini34 – 12996PeriplasmicSequence AnalysisAdd
    BLAST

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei13 – 3321HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ExbD/TolR family.Curated

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiCOG0848.
    KOiK03559.
    OMAiKGHENFG.
    OrthoDBiEOG6P5ZH2.

    Family and domain databases

    InterProiIPR003400. ExbD.
    IPR014171. TonB_ExbD_2.
    [Graphical view]
    PfamiPF02472. ExbD. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02804. ExbD_2. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    O25898-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKSIRRGDGL NVVPFIDIML VLLAIVLSIS TFIAQGKIKV SLPNAKNAEK    50
    SQPNDQKVVV ISVDEHDNIF VDDKPMNLEA LSAVVKQTDP KTLIDLKSDK 100
    SSRFETFISI MDILKEHNHE NFSISTQAQ 129
    Length:129
    Mass (Da):14,377
    Last modified:January 1, 1998 - v1
    Checksum:iD575395C4DDF28E9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE000511 Genomic DNA. Translation: AAD08382.1.
    PIRiD64687.
    RefSeqiNP_208132.1. NC_000915.1.
    YP_006935261.1. NC_018939.1.

    Genome annotation databases

    EnsemblBacteriaiAAD08382; AAD08382; HP_1340.
    GeneIDi13870548.
    898892.
    KEGGiheo:C694_06915.
    hpy:HP1340.
    PATRICi20594063. VBIHelPyl33062_1402.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE000511 Genomic DNA. Translation: AAD08382.1 .
    PIRi D64687.
    RefSeqi NP_208132.1. NC_000915.1.
    YP_006935261.1. NC_018939.1.

    3D structure databases

    ProteinModelPortali O25898.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-3143N.
    IntActi O25898. 1 interaction.
    MINTi MINT-175819.
    STRINGi 85962.HP1340.

    Proteomic databases

    PRIDEi O25898.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAD08382 ; AAD08382 ; HP_1340 .
    GeneIDi 13870548.
    898892.
    KEGGi heo:C694_06915.
    hpy:HP1340.
    PATRICi 20594063. VBIHelPyl33062_1402.

    Phylogenomic databases

    eggNOGi COG0848.
    KOi K03559.
    OMAi KGHENFG.
    OrthoDBi EOG6P5ZH2.

    Enzyme and pathway databases

    BioCyci HPY:HP1340-MONOMER.

    Family and domain databases

    InterProi IPR003400. ExbD.
    IPR014171. TonB_ExbD_2.
    [Graphical view ]
    Pfami PF02472. ExbD. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02804. ExbD_2. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 700392 / 26695.

    Entry informationi

    Entry nameiEXBD_HELPY
    AccessioniPrimary (citable) accession number: O25898
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 15, 1998
    Last sequence update: January 1, 1998
    Last modified: October 1, 2014
    This is version 77 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Helicobacter pylori
      Helicobacter pylori (strain 26695): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3