O25156 (Y395_HELPY) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
UPF0001 protein HP_0395

Gene names

Ordered Locus Names:

HP_0395

Organism

Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)

Taxonomic identifier

85962 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Epsilonproteobacteria › Campylobacterales › Helicobacteraceae › Helicobacter

Protein attributes

Sequence length	222 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity.
Sequence similarities	Belongs to the UPF0001 family.

Ontologies

Keywords
Ligand	Pyridoxal phosphate
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 222	222	UPF0001 protein HP_0395		PRO_0000163200
Amino acid modifications
	Modified residue	35	1	N6-(pyridoxal phosphate)lysine By similarity

Sequences

	Sequence		Length	Mass (Da)
	O25156 [UniParc]. Last modified January 1, 1998. Version 1. Checksum: 5A6B172FD3585949	FASTA	222	25,011
	10 20 30 40 50 60 MLDYRQKIDA LITKIEKART AYSRHHIVKI VAVSKNASPE AIQHYYNCSQ RAFGENKVQD 70 80 90 100 110 120 LKTKMHSLEH LPLEWHMIGS LQENKINALL SLKPALLHSL DSLKLALKIE KRCEILGVNL 130 140 150 160 170 180 NALLQVNSAY EESKSGVVPE EALEIYSQIS ETCKHLKLKG LMCIGAHTDD EKEIEKSFIT 190 200 210 220 TKKLFDQIKN ASVLSMGMSD DFELAIACGA NLLRIGSFLF KE

References

[1]

"The complete genome sequence of the gastric pathogen Helicobacter pylori." Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J. , Khalak H.G., Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., Smith H.O., Fraser C.M., Venter J.C. Nature 388:539-547(1997) [PubMed: 9252185] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700392 / 26695.

+

Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE000511 Genomic DNA. Translation: AAD07459.1.
PIR	C64569.
RefSeq	NP_207193.1. NC_000915.1.
3D structure databases
ProteinModelPortal	O25156.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	900071.
GenomeReviews	Gene locus HP_0395 in contig AE000511_GR.
KEGG	hpy:HP0395.
NMPDR	fig|85962.1.peg.391.
PATRIC	20592029. VBIHelPyl33062_0408.
TIGR	HP_0395.
Phylogenomic databases
HOGENOM	HBG289671.
OMA	AVSKTFE.
ProtClustDB	CLSK2459854.
Family and domain databases
InterPro	IPR001608. Ala_racemase_N. IPR011078. UPF0001. [Graphical view]
KO	K06997.
PANTHER	PTHR10146. PP_YBL036C. 1 hit.
Pfam	PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PIRSF	PIRSF004848. YBL036c_PLPDEIII. 1 hit.
TIGRFAMs	TIGR00044. TIGR00044. 1 hit.
PROSITE	PS01211. UPF0001. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y395_HELPY

Accession

Primary (citable) accession number: O25156

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 15, 1998
Last sequence update:	January 1, 1998
Last modified:	January 25, 2012
This is version 60 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program