O24970 (Y162_HELPY) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
UPF0082 protein HP_0162

Gene names

Ordered Locus Names:

HP_0162

Organism

Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)

Taxonomic identifier

85962 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Epsilonproteobacteria › Campylobacterales › Helicobacteraceae › Helicobacter

Protein attributes

Sequence length	240 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the TACO1 family.

Ontologies

Keywords
Technical term	3D-structure Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 240

240

UPF0082 protein HP_0162 HAMAP MF_00693

PRO_0000175820

Secondary structure

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240

Helix Strand Turn

Details...

Helix

23 – 35

13

Helix

41 – 43

3

Helix

45 – 57

13

Helix

61 – 70

10

Beta strand

79 – 87

9

Turn

88 – 90

3

Beta strand

91 – 100

10

Helix

102 – 113

12

Beta strand

120 – 122

3

Turn

124 – 129

6

Beta strand

130 – 140

11

Helix

141 – 146

6

Helix

151 – 158

8

Helix

159 – 161

3

Beta strand

163 – 169

7

Beta strand

172 – 178

7

Helix

179 – 181

3

Helix

182 – 191

10

Beta strand

197 – 207

11

Helix

213 – 227

15

Beta strand

232 – 239

8

Sequences

	Sequence		Length	Mass (Da)
	O24970 [UniParc]. Last modified January 1, 1998. Version 1. Checksum: 6BB7E0DC87B35F2E	FASTA	240	27,127
	10 20 30 40 50 60 MGRAFEYRRA AKEKRWDKMS KVFPKLAKAI TLAAKDGGSE PDTNAKLRTA ILNAKAQNMP 70 80 90 100 110 120 KDNIDAAIKR ASSKEGNLSE ITYEGKANFG VLIIMECMTD NPTRTIANLK SYFNKTQGAS 130 140 150 160 170 180 IVPNGSLEFM FNRKSVFECL KNEVENLKLS LEDLEFALID YGLEELEEVE DKIIIRGDYN 190 200 210 220 230 240 SFKLLNEGFE SLKLPILKAS LQRIATTPIE LNDEQMELTE KLLDRIEDDD DVVALYTNIE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The complete genome sequence of the gastric pathogen Helicobacter pylori." Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J. , Khalak H.G., Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., Smith H.O., Fraser C.M., Venter J.C. Nature 388:539-547(1997) [PubMed: 9252185] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700392 / 26695.
[2]	Kuzin A., Shen J., Keller J.P., Xiao R., Rost B., Montelione G., Hunt J.F. Submitted (SEP-2002) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS).
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE000511 Genomic DNA. Translation: AAD07231.1.

PIR

B64540.

RefSeq

NP_206961.1. NC_000915.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1MHF	model	-	A	1-240	[»]
1MW7	X-ray	2.00	A	1-240	[»]

ProteinModelPortal

O24970.

SMR

O24970. Positions 21-240.

ModBase

Search...

Protein-protein interaction databases

DIP

DIP-3628N.

MINT

MINT-183344.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

899999.

GenomeReviews

Gene locus HP_0162 in contig AE000511_GR.

KEGG

hpy:HP0162.

NMPDR

fig|85962.1.peg.159.

PATRIC

20591545. VBIHelPyl33062_0172.

TIGR

HP_0162.

Phylogenomic databases

HOGENOM

HBG715231.

OMA

FEYRRAA.

ProtClustDB

PRK12378.

Family and domain databases

HAMAP

MF_00693. UPF0082.
[Tree]

InterPro

IPR002876. DUF28.
IPR017856. Integrase_Zn-bd_dom-like_N.
[Graphical view]

Gene3D

G3DSA:1.10.10.200. Intgrase_N_Zn_bd. 1 hit.

PANTHER

PTHR12532. DUF28. 1 hit.

Pfam

PF01709. DUF28. 1 hit.
[Graphical view]

SUPFAM

SSF75625. DUF28. 1 hit.

TIGRFAMs

TIGR01033. TIGR01033. 1 hit.

ProtoNet

Search...

Entry information

Entry name

Y162_HELPY

Accession

Primary (citable) accession number: O24970

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 30, 2000
Last sequence update:	January 1, 1998
Last modified:	January 25, 2012
This is version 70 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program