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O24603 (O24603_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 106. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Endochitinase isolog EMBL AAB64049.1

Putative endochitinase EMBL BAE98366.1
Gene names
Name:CHI EMBL AEC10291.1
Ordered Locus Names:At2g43570 TAIR AT2G43570 EMBL AAM20661.1
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length277 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 chitin-binding type-1 domain. RuleBase RU000410

Sequences

Sequence LengthMass (Da)Tools
O24603 [UniParc].

Last modified January 1, 1998. Version 1.
Checksum: 0D0910C34F5E0AA5

FASTA27729,775
        10         20         30         40         50         60 
MAKPTSRNDR FALFFITLIF LILTVSKPVA SQNCGCASDF CCSKYGYCGT TDEFCGEGCQ 

        70         80         90        100        110        120 
AGPCRSSGGG GDPAVSLEGT VTPDFFNSIL NQRGDCPGKG FYTHDTFMAA ANSYPSFGAS 

       130        140        150        160        170        180 
ISKREIAAFF AHVAQETGFM CYIEEIDGPA KAASGEYCDT EKPEFPCAQG KGYYGRGAIQ 

       190        200        210        220        230        240 
LSWNYNYGLC GKALDENLLA SPEKVAQDQV LAFKTAFWFW TTNVRTSFKS GFGATIRAVN 

       250        260        270 
SRECSGGDST AKAANRIKYF QDYCGKLGVA PGDNLTC 

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana."
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A. expand/collapse author list , Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.
Nature 402:761-768(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]Rounsley S.D., Lin X., Ketchum K.A., Crosby M.L., Brandon R.C., Spriggs T.A., Mason T.M., Kerlavage A.R., Adams M.D., Somerville C.R., Venter J.C.
Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]Rounsley S.D., Tschudy M.M., Lin X., Ketchum K.A., Crosby M.L., Brandon R.C., Spriggs T.A., Mason T.M., Kerlavage A.R., Adams M.D., Somerville C.R., Venter J.C.
Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]Town C.D., Kaul S.
Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]Nguyen M., Karlin-Neumann G., Southwick A., Lam B., Miranda M., Palm C.J., Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K., Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C. expand/collapse author list , Lin J., Liu S.X., Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P., Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.
Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[6]Palm C.J., Davis R.W.
Submitted (OCT-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[7]Southwick A., Nguyen M., Tripp M., Palm C.J., Jones T., Wu T., Carninci P., Chen H., Cheuk R., Chan M.M., Chang C.H., Dale J.M., Deng J.M., Hayashizaki Y., Hsuan V.W., Lee J.M., Ishida J., Kamiya A. expand/collapse author list , Kawai J., Kim C.J., Narusaka M., Onodera C.S., Quach H.L., Sakurai T., Satou M., Seki M., Shinn P., Tang C.C., Toroumi M., Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Ecker J., Theologis A., Davis R.W.
Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[8]"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K. expand/collapse author list , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[9]TAIR
Swarbreck D., Lamesch P., Wilks C., Huala E.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[10]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC002333 Genomic DNA. Translation: AAB64049.1.
AC002335 Genomic DNA. Translation: AAM14808.1.
AY099810 mRNA. Translation: AAM20661.1.
BT003417 mRNA. Translation: AAO30080.1.
CP002685 Genomic DNA. Translation: AEC10291.1.
AK226201 mRNA. Translation: BAE98366.1.
PIRG84867.
RefSeqNP_181885.1. NM_129919.4.
UniGeneAt.36876.

3D structure databases

ProteinModelPortalO24603.
SMRO24603. Positions 36-277.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3702.AT2G43570.1-P.

Protein family/group databases

CAZyCBM18. Carbohydrate-Binding Module Family 18.
GH19. Glycoside Hydrolase Family 19.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT2G43570.1; AT2G43570.1; AT2G43570.
GeneID818959.
KEGGath:AT2G43570.

Organism-specific databases

TAIRAT2G43570.

Phylogenomic databases

eggNOGCOG3979.
HOGENOMHOG000231411.
InParanoidO24603.
KOK01183.
OMAYRAKNAN.
PhylomeDBO24603.

Enzyme and pathway databases

BioCycARA:AT2G43570-MONOMER.

Gene expression databases

GenevestigatorO24603.

Family and domain databases

Gene3D3.30.60.10. 1 hit.
InterProIPR001002. Chitin-bd_1.
IPR018371. Chitin-binding_1_CS.
IPR016283. Glyco_hydro_19.
IPR000726. Glyco_hydro_19_cat.
IPR023346. Lysozyme-like_dom.
[Graphical view]
PfamPF00187. Chitin_bind_1. 1 hit.
PF00182. Glyco_hydro_19. 1 hit.
[Graphical view]
PIRSFPIRSF001060. Endochitinase. 1 hit.
ProDomPD000609. Chitin_bd_1. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTSM00270. ChtBD1. 1 hit.
[Graphical view]
SUPFAMSSF53955. SSF53955. 1 hit.
SSF57016. SSF57016. 1 hit.
PROSITEPS00026. CHIT_BIND_I_1. 1 hit.
PS50941. CHIT_BIND_I_2. 1 hit.
PS00773. CHITINASE_19_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameO24603_ARATH
AccessionPrimary (citable) accession number: O24603
Entry history
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: July 9, 2014
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)