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Protein
Submitted name:

Chitinase class 4-like protein

Gene

CHI

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. chitinase activity Source: InterPro
  2. chitin binding Source: UniProtKB-KW

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
  2. cell wall macromolecule catabolic process Source: InterPro
  3. chitin catabolic process Source: InterPro
  4. systemic acquired resistance Source: TAIR
Complete GO annotation...

Keywords - Ligandi

Chitin-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciARA:AT2G43570-MONOMER.

Protein family/group databases

CAZyiCBM18. Carbohydrate-Binding Module Family 18.
GH19. Glycoside Hydrolase Family 19.

Names & Taxonomyi

Protein namesi
Submitted name:
Chitinase class 4-like proteinImported
Submitted name:
Endochitinase isologImported
Submitted name:
Putative endochitinaseImported
Gene namesi
Name:CHIImported
Ordered Locus Names:At2g43570Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 2

Organism-specific databases

TAIRiAT2G43570.

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: TAIR
  2. plant-type cell wall Source: TAIR
Complete GO annotation...

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotation

Expressioni

Gene expression databases

GenevestigatoriO24603.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G43570.1-P.

Structurei

3D structure databases

ProteinModelPortaliO24603.
SMRiO24603. Positions 36-277.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 chitin-binding type-1 domain.UniRule annotation

Phylogenomic databases

eggNOGiCOG3979.
HOGENOMiHOG000231411.
KOiK01183.
OMAiANRIKYF.
PhylomeDBiO24603.

Family and domain databases

Gene3Di3.30.60.10. 1 hit.
InterProiIPR001002. Chitin-bd_1.
IPR018371. Chitin-binding_1_CS.
IPR016283. Glyco_hydro_19.
IPR000726. Glyco_hydro_19_cat.
IPR023346. Lysozyme-like_dom.
[Graphical view]
PfamiPF00187. Chitin_bind_1. 1 hit.
PF00182. Glyco_hydro_19. 1 hit.
[Graphical view]
PIRSFiPIRSF001060. Endochitinase. 1 hit.
ProDomiPD000609. Chitin_bd_1. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00270. ChtBD1. 1 hit.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
SSF57016. SSF57016. 1 hit.
PROSITEiPS00026. CHIT_BIND_I_1. 1 hit.
PS50941. CHIT_BIND_I_2. 1 hit.
PS00773. CHITINASE_19_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O24603-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAKPTSRNDR FALFFITLIF LILTVSKPVA SQNCGCASDF CCSKYGYCGT
60 70 80 90 100
TDEFCGEGCQ AGPCRSSGGG GDPAVSLEGT VTPDFFNSIL NQRGDCPGKG
110 120 130 140 150
FYTHDTFMAA ANSYPSFGAS ISKREIAAFF AHVAQETGFM CYIEEIDGPA
160 170 180 190 200
KAASGEYCDT EKPEFPCAQG KGYYGRGAIQ LSWNYNYGLC GKALDENLLA
210 220 230 240 250
SPEKVAQDQV LAFKTAFWFW TTNVRTSFKS GFGATIRAVN SRECSGGDST
260 270
AKAANRIKYF QDYCGKLGVA PGDNLTC
Length:277
Mass (Da):29,775
Last modified:January 1, 1998 - v1
Checksum:i0D0910C34F5E0AA5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002333 Genomic DNA. Translation: AAB64049.1.
AC002335 Genomic DNA. Translation: AAM14808.1.
AY099810 mRNA. Translation: AAM20661.1.
BT003417 mRNA. Translation: AAO30080.1.
CP002685 Genomic DNA. Translation: AEC10291.1.
AK226201 mRNA. Translation: BAE98366.1.
PIRiG84867.
RefSeqiNP_181885.1. NM_129919.4.
UniGeneiAt.36876.

Genome annotation databases

EnsemblPlantsiAT2G43570.1; AT2G43570.1; AT2G43570.
GeneIDi818959.
KEGGiath:AT2G43570.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002333 Genomic DNA. Translation: AAB64049.1.
AC002335 Genomic DNA. Translation: AAM14808.1.
AY099810 mRNA. Translation: AAM20661.1.
BT003417 mRNA. Translation: AAO30080.1.
CP002685 Genomic DNA. Translation: AEC10291.1.
AK226201 mRNA. Translation: BAE98366.1.
PIRiG84867.
RefSeqiNP_181885.1. NM_129919.4.
UniGeneiAt.36876.

3D structure databases

ProteinModelPortaliO24603.
SMRiO24603. Positions 36-277.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G43570.1-P.

Protein family/group databases

CAZyiCBM18. Carbohydrate-Binding Module Family 18.
GH19. Glycoside Hydrolase Family 19.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G43570.1; AT2G43570.1; AT2G43570.
GeneIDi818959.
KEGGiath:AT2G43570.

Organism-specific databases

TAIRiAT2G43570.

Phylogenomic databases

eggNOGiCOG3979.
HOGENOMiHOG000231411.
KOiK01183.
OMAiANRIKYF.
PhylomeDBiO24603.

Enzyme and pathway databases

BioCyciARA:AT2G43570-MONOMER.

Gene expression databases

GenevestigatoriO24603.

Family and domain databases

Gene3Di3.30.60.10. 1 hit.
InterProiIPR001002. Chitin-bd_1.
IPR018371. Chitin-binding_1_CS.
IPR016283. Glyco_hydro_19.
IPR000726. Glyco_hydro_19_cat.
IPR023346. Lysozyme-like_dom.
[Graphical view]
PfamiPF00187. Chitin_bind_1. 1 hit.
PF00182. Glyco_hydro_19. 1 hit.
[Graphical view]
PIRSFiPIRSF001060. Endochitinase. 1 hit.
ProDomiPD000609. Chitin_bd_1. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00270. ChtBD1. 1 hit.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
SSF57016. SSF57016. 1 hit.
PROSITEiPS00026. CHIT_BIND_I_1. 1 hit.
PS50941. CHIT_BIND_I_2. 1 hit.
PS00773. CHITINASE_19_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
  3. Cited for: NUCLEOTIDE SEQUENCE.
  4. Town C.D., Kaul S.
    Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  5. Cited for: NUCLEOTIDE SEQUENCE.
  6. Palm C.J., Davis R.W.
    Submitted (OCT-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  7. Cited for: NUCLEOTIDE SEQUENCE.
  8. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.
    , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  9. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  10. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiO24603_ARATH
AccessioniPrimary (citable) accession number: O24603
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: February 4, 2015
This is version 112 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.