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O24603

- O24603_ARATH

UniProt

O24603 - O24603_ARATH

Protein
Submitted name:

Chitinase class 4-like protein

Gene

CHI

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 108 (01 Oct 2014)
      Sequence version 1 (01 Jan 1998)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. chitinase activity Source: InterPro
    2. chitin binding Source: UniProtKB-KW

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro
    2. cell wall macromolecule catabolic process Source: InterPro
    3. chitin catabolic process Source: InterPro

    Keywords - Ligandi

    Chitin-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciARA:AT2G43570-MONOMER.

    Protein family/group databases

    CAZyiCBM18. Carbohydrate-Binding Module Family 18.
    GH19. Glycoside Hydrolase Family 19.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Chitinase class 4-like proteinImported
    Submitted name:
    Endochitinase isologImported
    Submitted name:
    Putative endochitinaseImported
    Gene namesi
    Name:CHIImported
    Ordered Locus Names:At2g43570Imported
    OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 2

    Organism-specific databases

    TAIRiAT2G43570.

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: TAIR
    2. plant-type cell wall Source: TAIR

    PTM / Processingi

    Keywords - PTMi

    Disulfide bondSAAS annotation

    Expressioni

    Gene expression databases

    GenevestigatoriO24603.

    Interactioni

    Protein-protein interaction databases

    STRINGi3702.AT2G43570.1-P.

    Structurei

    3D structure databases

    SMRiO24603. Positions 36-277.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 chitin-binding type-1 domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG3979.
    HOGENOMiHOG000231411.
    InParanoidiO24603.
    KOiK01183.
    OMAiYRAKNAN.
    PhylomeDBiO24603.

    Family and domain databases

    Gene3Di3.30.60.10. 1 hit.
    InterProiIPR001002. Chitin-bd_1.
    IPR018371. Chitin-binding_1_CS.
    IPR016283. Glyco_hydro_19.
    IPR000726. Glyco_hydro_19_cat.
    IPR023346. Lysozyme-like_dom.
    [Graphical view]
    PfamiPF00187. Chitin_bind_1. 1 hit.
    PF00182. Glyco_hydro_19. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001060. Endochitinase. 1 hit.
    ProDomiPD000609. Chitin_bd_1. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SMARTiSM00270. ChtBD1. 1 hit.
    [Graphical view]
    SUPFAMiSSF53955. SSF53955. 1 hit.
    SSF57016. SSF57016. 1 hit.
    PROSITEiPS00026. CHIT_BIND_I_1. 1 hit.
    PS50941. CHIT_BIND_I_2. 1 hit.
    PS00773. CHITINASE_19_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    O24603-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKPTSRNDR FALFFITLIF LILTVSKPVA SQNCGCASDF CCSKYGYCGT    50
    TDEFCGEGCQ AGPCRSSGGG GDPAVSLEGT VTPDFFNSIL NQRGDCPGKG 100
    FYTHDTFMAA ANSYPSFGAS ISKREIAAFF AHVAQETGFM CYIEEIDGPA 150
    KAASGEYCDT EKPEFPCAQG KGYYGRGAIQ LSWNYNYGLC GKALDENLLA 200
    SPEKVAQDQV LAFKTAFWFW TTNVRTSFKS GFGATIRAVN SRECSGGDST 250
    AKAANRIKYF QDYCGKLGVA PGDNLTC 277
    Length:277
    Mass (Da):29,775
    Last modified:January 1, 1998 - v1
    Checksum:i0D0910C34F5E0AA5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC002333 Genomic DNA. Translation: AAB64049.1.
    AC002335 Genomic DNA. Translation: AAM14808.1.
    AY099810 mRNA. Translation: AAM20661.1.
    BT003417 mRNA. Translation: AAO30080.1.
    CP002685 Genomic DNA. Translation: AEC10291.1.
    AK226201 mRNA. Translation: BAE98366.1.
    PIRiG84867.
    RefSeqiNP_181885.1. NM_129919.4.
    UniGeneiAt.36876.

    Genome annotation databases

    EnsemblPlantsiAT2G43570.1; AT2G43570.1; AT2G43570.
    GeneIDi818959.
    KEGGiath:AT2G43570.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC002333 Genomic DNA. Translation: AAB64049.1 .
    AC002335 Genomic DNA. Translation: AAM14808.1 .
    AY099810 mRNA. Translation: AAM20661.1 .
    BT003417 mRNA. Translation: AAO30080.1 .
    CP002685 Genomic DNA. Translation: AEC10291.1 .
    AK226201 mRNA. Translation: BAE98366.1 .
    PIRi G84867.
    RefSeqi NP_181885.1. NM_129919.4.
    UniGenei At.36876.

    3D structure databases

    SMRi O24603. Positions 36-277.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.AT2G43570.1-P.

    Protein family/group databases

    CAZyi CBM18. Carbohydrate-Binding Module Family 18.
    GH19. Glycoside Hydrolase Family 19.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT2G43570.1 ; AT2G43570.1 ; AT2G43570 .
    GeneIDi 818959.
    KEGGi ath:AT2G43570.

    Organism-specific databases

    TAIRi AT2G43570.

    Phylogenomic databases

    eggNOGi COG3979.
    HOGENOMi HOG000231411.
    InParanoidi O24603.
    KOi K01183.
    OMAi YRAKNAN.
    PhylomeDBi O24603.

    Enzyme and pathway databases

    BioCyci ARA:AT2G43570-MONOMER.

    Gene expression databases

    Genevestigatori O24603.

    Family and domain databases

    Gene3Di 3.30.60.10. 1 hit.
    InterProi IPR001002. Chitin-bd_1.
    IPR018371. Chitin-binding_1_CS.
    IPR016283. Glyco_hydro_19.
    IPR000726. Glyco_hydro_19_cat.
    IPR023346. Lysozyme-like_dom.
    [Graphical view ]
    Pfami PF00187. Chitin_bind_1. 1 hit.
    PF00182. Glyco_hydro_19. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001060. Endochitinase. 1 hit.
    ProDomi PD000609. Chitin_bd_1. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SMARTi SM00270. ChtBD1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53955. SSF53955. 1 hit.
    SSF57016. SSF57016. 1 hit.
    PROSITEi PS00026. CHIT_BIND_I_1. 1 hit.
    PS50941. CHIT_BIND_I_2. 1 hit.
    PS00773. CHITINASE_19_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. ColumbiaImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
    3. Cited for: NUCLEOTIDE SEQUENCE.
    4. Town C.D., Kaul S.
      Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    5. Cited for: NUCLEOTIDE SEQUENCE.
    6. Palm C.J., Davis R.W.
      Submitted (OCT-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    7. Cited for: NUCLEOTIDE SEQUENCE.
    8. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
      Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.
      , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
      Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    9. TAIR
      Swarbreck D., Lamesch P., Wilks C., Huala E.
      Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    10. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. ColumbiaImported.

    Entry informationi

    Entry nameiO24603_ARATH
    AccessioniPrimary (citable) accession number: O24603
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 1, 1998
    Last sequence update: January 1, 1998
    Last modified: October 1, 2014
    This is version 108 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3