O24603 (O24603_ARATH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Chitinase class 4-like protein EMBL AEC10291.1

Submitted name:
Endochitinase isolog EMBL AAB64049.1
Submitted name:
Putative endochitinase EMBL BAE98366.1

Gene names

Name:	CHI EMBL AEC10291.1
Ordered Locus Names:	At2g43570 TAIR At2g43570 EMBL AAM20661.1
ORF Names:	AT2G43570 EMBL AEC10291.1

Organism

Arabidopsis thaliana (Mouse-ear cress) EMBL AAB64049.1

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	277 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 chitin-binding type-1 domain. RuleBase RU000410

Ontologies

Keywords
Ligand	Chitin-binding SAAS SAAS001002 RuleBase RU000410
PTM	Disulfide bond SAAS SAAS016283
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	cell wall macromolecule catabolic process Inferred from electronic annotation. Source: InterPro chitin catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	apoplast Inferred from direct assay. Source: TAIR plant-type cell wall Inferred from direct assay. Source: TAIR
Molecular function	chitin binding Inferred from electronic annotation. Source: UniProtKB-KW chitinase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O24603 [UniParc]. Last modified January 1, 1998. Version 1. Checksum: 0D0910C34F5E0AA5	FASTA	277	29,775
	10 20 30 40 50 60 MAKPTSRNDR FALFFITLIF LILTVSKPVA SQNCGCASDF CCSKYGYCGT TDEFCGEGCQ 70 80 90 100 110 120 AGPCRSSGGG GDPAVSLEGT VTPDFFNSIL NQRGDCPGKG FYTHDTFMAA ANSYPSFGAS 130 140 150 160 170 180 ISKREIAAFF AHVAQETGFM CYIEEIDGPA KAASGEYCDT EKPEFPCAQG KGYYGRGAIQ 190 200 210 220 230 240 LSWNYNYGLC GKALDENLLA SPEKVAQDQV LAFKTAFWFW TTNVRTSFKS GFGATIRAVN 250 260 270 SRECSGGDST AKAANRIKYF QDYCGKLGVA PGDNLTC

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana." Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A. , Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C. Nature 402:761-768(1999) [PubMed: 10617197] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	TAIR Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[4]	Town C.D., Kaul S. Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[5]	Rounsley S.D., Lin X., Ketchum K.A., Crosby M.L., Brandon R.C., Spriggs T.A., Mason T.M., Kerlavage A.R., Adams M.D., Somerville C.R., Venter J.C. Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[6]	Rounsley S.D., Tschudy M.M., Lin X., Ketchum K.A., Crosby M.L., Brandon R.C., Spriggs T.A., Mason T.M., Kerlavage A.R., Adams M.D., Somerville C.R., Venter J.C. Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[7]	Nguyen M., Karlin-Neumann G., Southwick A., Lam B., Miranda M., Palm C.J., Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K., Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C. , Lin J., Liu S.X., Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P., Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W. Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[8]	Palm C.J., Davis R.W. Submitted (OCT-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[9]	Southwick A., Nguyen M., Tripp M., Palm C.J., Jones T., Wu T., Carninci P., Chen H., Cheuk R., Chan M.M., Chang C.H., Dale J.M., Deng J.M., Hayashizaki Y., Hsuan V.W., Lee J.M., Ishida J., Kamiya A. , Kawai J., Kim C.J., Narusaka M., Onodera C.S., Quach H.L., Sakurai T., Satou M., Seki M., Shinn P., Tang C.C., Toroumi M., Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Ecker J., Theologis A., Davis R.W. Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[10]	"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs." Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K. , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K. Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC002333 Genomic DNA. Translation: AAB64049.1. AC002335 Genomic DNA. Translation: AAM14808.1. AY099810 mRNA. Translation: AAM20661.1. BT003417 mRNA. Translation: AAO30080.1. CP002685 Genomic DNA. Translation: AEC10291.1. AK226201 mRNA. Translation: BAE98366.1.
IPI	IPI00535327.
PIR	G84867.
RefSeq	NP_181885.1. NM_129919.4.
UniGene	At.36876.
3D structure databases
HSSP	HSSP built from PDB template 2BAA based on UniProtKB P23951.
ProteinModelPortal	O24603.
SMR	O24603. Positions 31-277.
ModBase	Search...
Protein family/group databases
CAZy	CBM18. Carbohydrate-Binding Module Family 18. GH19. Glycoside Hydrolase Family 19.
Proteomic databases
PRIDE	O24603.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT2G43570.1; AT2G43570.1; AT2G43570.
GeneID	818959.
GenomeReviews	Gene locus AT2G43570 in contig CT485783_GR.
KEGG	ath:AT2G43570.
NMPDR	fig|3702.1.peg.11514.
Organism-specific databases
TAIR	At2g43570.
Phylogenomic databases
eggNOG	KOG4742.
GeneTree	EPGT00070000027946.
HOGENOM	HBG748705.
InParanoid	O24603.
OMA	ANRIKYF.
PhylomeDB	O24603.
ProtClustDB	CLSN2912898.
Gene expression databases
ArrayExpress	O24603.
Genevestigator	O24603.
Family and domain databases
InterPro	IPR001002. Chitin-bd_1. IPR018371. Chitin-binding_1_CS. IPR016283. Glyco_hydro_19. IPR000726. Glyco_hydro_19_cat. IPR023346. Lysozyme-like_dom. [Graphical view]
Gene3D	G3DSA:3.30.60.10. Chitin_bd_1. 1 hit.
Pfam	PF00187. Chitin_bind_1. 1 hit. PF00182. Glyco_hydro_19. 1 hit. [Graphical view]
PIRSF	PIRSF001060. Endochitinase. 1 hit.
ProDom	PD000609. Chitin_bd_1. 1 hit. [Graphical view] [Entries sharing at least one domain]
SMART	SM00270. ChtBD1. 1 hit. [Graphical view]
SUPFAM	SSF57016. Chitin_bd_1. 1 hit. SSF53955. SSF53955. 1 hit.
PROSITE	PS00026. CHIT_BIND_I_1. 1 hit. PS50941. CHIT_BIND_I_2. 1 hit. PS00773. CHITINASE_19_1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

O24603_ARATH

Accession

Primary (citable) accession number: O24603

Entry history

Integrated into UniProtKB/TrEMBL:	January 1, 1998
Last sequence update:	January 1, 1998
Last modified:	January 25, 2012
This is version 84 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)