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Protein

Endochitinase At2g43580

Gene

At2g43580

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Random hydrolysis of N-acetyl-beta-D-glucosaminide (1->4)-beta-linkages in chitin and chitodextrins.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Chitin degradation, Plant defense, Polysaccharide degradation

Keywords - Ligandi

Chitin-binding

Enzyme and pathway databases

BioCyciARA:AT2G43580-MONOMER.

Protein family/group databases

CAZyiCBM18. Carbohydrate-Binding Module Family 18.
GH19. Glycoside Hydrolase Family 19.

Names & Taxonomyi

Protein namesi
Recommended name:
Endochitinase At2g43580Curated (EC:3.2.1.14)
Gene namesi
Ordered Locus Names:At2g43580Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G43580.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2424Sequence analysisAdd
BLAST
Chaini25 – 265241Endochitinase At2g43580Sequence analysisPRO_0000433912Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi27 ↔ 35PROSITE-ProRule annotation
Disulfide bondi29 ↔ 41PROSITE-ProRule annotation
Disulfide bondi34 ↔ 48PROSITE-ProRule annotation
Disulfide bondi52 ↔ 57PROSITE-ProRule annotation
Glycosylationi102 – 1021N-linked (GlcNAc...)PROSITE-ProRule annotation
Glycosylationi262 – 2621N-linked (GlcNAc...)PROSITE-ProRule annotation

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiO24598.
PRIDEiO24598.

Expressioni

Inductioni

Accumulates during Botrytis cinerea infection.1 Publication

Gene expression databases

GenevisibleiO24598. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G43580.1.

Structurei

3D structure databases

ProteinModelPortaliO24598.
SMRiO24598. Positions 29-58, 72-265.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini25 – 5935Chitin-binding type-1PROSITE-ProRule annotationAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni67 – 265199CatalyticBy similarityAdd
BLAST

Sequence similaritiesi

Contains 1 chitin-binding type-1 domain.PROSITE-ProRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiKOG4742. Eukaryota.
COG3979. LUCA.
HOGENOMiHOG000231411.
InParanoidiO24598.
KOiK01183.
OMAiMFAHFTY.
PhylomeDBiO24598.

Family and domain databases

Gene3Di3.30.60.10. 1 hit.
InterProiIPR001002. Chitin-bd_1.
IPR018371. Chitin-binding_1_CS.
IPR016283. Glyco_hydro_19.
IPR000726. Glyco_hydro_19_cat.
IPR023346. Lysozyme-like_dom.
[Graphical view]
PfamiPF00187. Chitin_bind_1. 1 hit.
PF00182. Glyco_hydro_19. 2 hits.
[Graphical view]
PIRSFiPIRSF001060. Endochitinase. 1 hit.
PRINTSiPR00451. CHITINBINDNG.
ProDomiPD000609. Chitin_bd_1. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00270. ChtBD1. 1 hit.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
SSF57016. SSF57016. 1 hit.
PROSITEiPS00026. CHIT_BIND_I_1. 1 hit.
PS50941. CHIT_BIND_I_2. 1 hit.
PS00773. CHITINASE_19_1. 1 hit.
PS00774. CHITINASE_19_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O24598-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALTKIFLIL LLSLLGLYSE TVKSQNCDCA PNLCCSQFGY CGTTADYCGS
60 70 80 90 100
TCQSGPCRVG GPPTGAGLVG NIVTQIFFNN IINQAGNGCA GKSFYTRDSF
110 120 130 140 150
INATNTFPSF ANTVTRREIA TMFAHFTYET GHFCYIEEIN GASRVMCDQN
160 170 180 190 200
NRQYPCAPAK SYHGRGPLLL SWNFNYGACG QSLGLDLLRQ PELVSSNPVV
210 220 230 240 250
AFRTALWFWM KSVRPVLNQG FGATIRAISG FDCDGRNLGG VNARIGYYRD
260
YCGQLGLDPG ANITC
Length:265
Mass (Da):28,781
Last modified:January 1, 1998 - v1
Checksum:i670EDB4EB480AAD3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002333 Genomic DNA. Translation: AAB64048.1.
AC002335 Genomic DNA. Translation: AAM14811.1.
CP002685 Genomic DNA. Translation: AEC10292.1.
AK118596 mRNA. Translation: BAC43195.1.
BT006229 mRNA. Translation: AAP12878.1.
PIRiH84867.
RefSeqiNP_181886.1. NM_129920.2.
UniGeneiAt.36875.

Genome annotation databases

EnsemblPlantsiAT2G43580.1; AT2G43580.1; AT2G43580.
GeneIDi818960.
GrameneiAT2G43580.1; AT2G43580.1; AT2G43580.
KEGGiath:AT2G43580.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002333 Genomic DNA. Translation: AAB64048.1.
AC002335 Genomic DNA. Translation: AAM14811.1.
CP002685 Genomic DNA. Translation: AEC10292.1.
AK118596 mRNA. Translation: BAC43195.1.
BT006229 mRNA. Translation: AAP12878.1.
PIRiH84867.
RefSeqiNP_181886.1. NM_129920.2.
UniGeneiAt.36875.

3D structure databases

ProteinModelPortaliO24598.
SMRiO24598. Positions 29-58, 72-265.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G43580.1.

Protein family/group databases

CAZyiCBM18. Carbohydrate-Binding Module Family 18.
GH19. Glycoside Hydrolase Family 19.

Proteomic databases

PaxDbiO24598.
PRIDEiO24598.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G43580.1; AT2G43580.1; AT2G43580.
GeneIDi818960.
GrameneiAT2G43580.1; AT2G43580.1; AT2G43580.
KEGGiath:AT2G43580.

Organism-specific databases

TAIRiAT2G43580.

Phylogenomic databases

eggNOGiKOG4742. Eukaryota.
COG3979. LUCA.
HOGENOMiHOG000231411.
InParanoidiO24598.
KOiK01183.
OMAiMFAHFTY.
PhylomeDBiO24598.

Enzyme and pathway databases

BioCyciARA:AT2G43580-MONOMER.

Miscellaneous databases

PROiO24598.

Gene expression databases

GenevisibleiO24598. AT.

Family and domain databases

Gene3Di3.30.60.10. 1 hit.
InterProiIPR001002. Chitin-bd_1.
IPR018371. Chitin-binding_1_CS.
IPR016283. Glyco_hydro_19.
IPR000726. Glyco_hydro_19_cat.
IPR023346. Lysozyme-like_dom.
[Graphical view]
PfamiPF00187. Chitin_bind_1. 1 hit.
PF00182. Glyco_hydro_19. 2 hits.
[Graphical view]
PIRSFiPIRSF001060. Endochitinase. 1 hit.
PRINTSiPR00451. CHITINBINDNG.
ProDomiPD000609. Chitin_bd_1. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00270. ChtBD1. 1 hit.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
SSF57016. SSF57016. 1 hit.
PROSITEiPS00026. CHIT_BIND_I_1. 1 hit.
PS50941. CHIT_BIND_I_2. 1 hit.
PS00773. CHITINASE_19_1. 1 hit.
PS00774. CHITINASE_19_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Expression pattern of the Arabidopsis thaliana AtEP3/AtchitIV endochitinase gene."
    Passarinho P.A., Van Hengel A.J., Fransz P.F., de Vries S.C.
    Planta 212:556-567(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.
  6. "Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens."
    Zheng Z., Qamar S.A., Chen Z., Mengiste T.
    Plant J. 48:592-605(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: INDUCTION BY BOTRYTIS.
    Strain: cv. Columbia.

Entry informationi

Entry nameiCHI58_ARATH
AccessioniPrimary (citable) accession number: O24598
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 14, 2015
Last sequence update: January 1, 1998
Last modified: June 8, 2016
This is version 123 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.