Unreviewed, UniProtKB/TrEMBL O24598 (O24598_ARATH)

Names and origin

Protein names

Submitted name:
    At2g43580 EMBL AAP12878.1
Submitted name:
    Putative endochitinase EMBL AAB64048.1

Gene names

Ordered Locus Names:

At2g43580 EMBL AAB64048.1 TAIR At2g43580

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	265 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Sequence similarities

Contains 1 chitin-binding type-1 domain. RuleBase RU000410V1

Ontologies

Keywords
Ligand	Chitin-binding RuleBase RU000410V1 Spearmint SPM018371
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cell wall macromolecule catabolic process Inferred from electronic annotation. Source: InterPro chitin catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	chitin binding Inferred from electronic annotation. Source: InterPro chitinase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O24598-1 [UniParc]. Last modified January 1, 1998. Version 1. Checksum: 670EDB4EB480AAD3	FASTA	265	28,781
	10 20 30 40 50 60 MALTKIFLIL LLSLLGLYSE TVKSQNCDCA PNLCCSQFGY CGTTADYCGS TCQSGPCRVG 70 80 90 100 110 120 GPPTGAGLVG NIVTQIFFNN IINQAGNGCA GKSFYTRDSF INATNTFPSF ANTVTRREIA 130 140 150 160 170 180 TMFAHFTYET GHFCYIEEIN GASRVMCDQN NRQYPCAPAK SYHGRGPLLL SWNFNYGACG 190 200 210 220 230 240 QSLGLDLLRQ PELVSSNPVV AFRTALWFWM KSVRPVLNQG FGATIRAISG FDCDGRNLGG 250 260 VNARIGYYRD YCGQLGLDPG ANITC

References

[1]	Rounsley S.D., Lin X., Ketchum K.A., Crosby M.L., Brandon R.C., Spriggs T.A., Mason T.M., Kerlavage A.R., Adams M.D., Somerville C.R., Venter J.C. Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[2]	Town C.D., Kaul S. Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	"Arabidopsis ORF clones." Kim C.J., Chen H., Cheuk R., Shinn P., Bowser L., Carninci P., Chan M.M., Chang C.H., Dale J.M., Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M. , Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (APR-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[4]	"Arabidopsis thaliana full-length cDNA." Seki M., Iida K., Satou M., Sakurai T., Akiyama K., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K. Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[5]	Rounsley S.D., Tschudy M.M., Lin X., Ketchum K.A., Crosby M.L., Brandon R.C., Spriggs T.A., Mason T.M., Kerlavage A.R., Adams M.D., Somerville C.R., Venter J.C. Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AC002333 Genomic DNA. Translation: AAB64048.1. AC002335 Genomic DNA. Translation: AAM14811.1. BT006229 mRNA. Translation: AAP12878.1. AK118596 mRNA. Translation: BAC43195.1.
IPI	IPI00539620.
PIR	H84867.
RefSeq	NP_181886.1.
UniGene	At.36875
3D structure databases
HSSP	HSSP built from PDB template 1Q9B based on UniProtKB P02877.
ModBase	Search...
Protein family/group databases
CAZy	CBM18. Carbohydrate-Binding Module Family 18. GH19. Glycoside Hydrolase Family 19.
Genome annotation databases
GeneID	818960.
GenomeReviews	Gene locus AT2G43580 in contig CT485783_GR.
KEGG	ath:AT2G43580.
NMPDR	fig|3702.1.peg.11515.
Organism-specific databases
TAIR	At2g43580.
Phylogenomic databases
OMA	O24598. FINATNT.
Gene expression databases
ArrayExpress	O24598.
Family and domain databases
InterPro	IPR018371. Chitin-binding_1_CS. IPR001002. Chitin_bd_1. IPR016283. Glyco_hydro_19. IPR000726. Glyco_hydro_19_cat. [Graphical view]
PANTHER	PTHR22595. Glyco_hydro_19_cat. 1 hit.
Pfam	PF00187. Chitin_bind_1. 1 hit. PF00182. Glyco_hydro_19. 1 hit. [Graphical view]
PIRSF	PIRSF001060. Endochitinase. 1 hit.
PRINTS	PR00451. CHITINBINDNG.
ProDom	PD000609. Chitin_binding_1. 1 hit. PD354900. Glyco_hydro_19. 1 hit. [Graphical view] [Entries sharing at least one domain]
SMART	SM00270. ChtBD1. 1 hit. [Graphical view]
PROSITE	PS00026. CHIT_BIND_I_1. 1 hit. PS50941. CHIT_BIND_I_2. 1 hit. PS00773. CHITINASE_19_1. 1 hit. PS00774. CHITINASE_19_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

O24598_ARATH

Accession

Primary (citable) accession number: O24598

Entry history

Integrated into UniProtKB/TrEMBL:	January 1, 1998
Last sequence update:	January 1, 1998
Last modified:	June 16, 2009
This is version 59 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)