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Protein
Submitted name:

Class IV endochitinase

Gene

VvChi4A

Organism
Vitis vinifera (Grape)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Keywords - Ligandi

Chitin-bindingUniRule annotationSAAS annotation

Protein family/group databases

CAZyiCBM18. Carbohydrate-Binding Module Family 18.
GH19. Glycoside Hydrolase Family 19.

Names & Taxonomyi

Protein namesi
Submitted name:
Class IV endochitinaseImported (EC:3.2.1.14Imported)
Gene namesi
Name:VvChi4AImported
OrganismiVitis vinifera (Grape)Imported
Taxonomic identifieri29760 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeVitis

Pathology & Biotechi

Protein family/group databases

Allergomei946. Vit v 5.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2020Sequence analysisAdd
BLAST
Chaini21 – 261241Sequence analysisPRO_5004158525Add
BLAST

Keywords - PTMi

Disulfide bondSAAS annotation

Proteomic databases

PRIDEiO24530.

Interactioni

Protein-protein interaction databases

STRINGi29760.VIT_05s0094g00340.t01.

Structurei

3D structure databases

ProteinModelPortaliO24530.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini20 – 5536Chitin-binding type-1InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 19 family.SAAS annotation
Contains 1 chitin-binding type-1 domain.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiKOG4742. Eukaryota.
COG3979. LUCA.
KOiK01183.

Family and domain databases

Gene3Di3.30.60.10. 1 hit.
InterProiIPR001002. Chitin-bd_1.
IPR018371. Chitin-binding_1_CS.
IPR016283. Glyco_hydro_19.
IPR000726. Glyco_hydro_19_cat.
IPR023346. Lysozyme-like_dom.
[Graphical view]
PfamiPF00187. Chitin_bind_1. 1 hit.
PF00182. Glyco_hydro_19. 2 hits.
[Graphical view]
PIRSFiPIRSF001060. Endochitinase. 1 hit.
PRINTSiPR00451. CHITINBINDNG.
ProDomiPD000609. Chitin_bd_1. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00270. ChtBD1. 1 hit.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
SSF57016. SSF57016. 1 hit.
PROSITEiPS00026. CHIT_BIND_I_1. 1 hit.
PS50941. CHIT_BIND_I_2. 1 hit.
PS00773. CHITINASE_19_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O24530-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAKLLTVLL VGALFGAAVA QNCGCASGLC CSKYGYCGTG SDYCGDGCQS
60 70 80 90 100
GPCDSSGSSV SDIVTQSFFD GIISQAASSC AGKNFYTRAA FLSALNSYSG
110 120 130 140 150
FGNDGSTDAN KREIAAFFAH VTHETGHFCY IEEINGASHN YCDSSNTQYP
160 170 180 190 200
CVSGQNYYGR GPLQLTWNYN YGAAGNSIGF NGLSNPGIVA TDVVTSFKTA
210 220 230 240 250
LWFWMNNVHS VIGQGFGATI RAINGAVECN GGNTAAVNAR VQYYKDYCSQ
260
LGASPGDNLT C
Length:261
Mass (Da):27,242
Last modified:January 1, 1998 - v1
Checksum:i50408567107262A9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U97521 mRNA. Translation: AAB65776.1.
RefSeqiNP_001268031.1. NM_001281102.1.
UniGeneiVvi.8171.

Genome annotation databases

GeneIDi100233077.
KEGGivvi:100233077.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U97521 mRNA. Translation: AAB65776.1.
RefSeqiNP_001268031.1. NM_001281102.1.
UniGeneiVvi.8171.

3D structure databases

ProteinModelPortaliO24530.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi29760.VIT_05s0094g00340.t01.

Protein family/group databases

Allergomei946. Vit v 5.
CAZyiCBM18. Carbohydrate-Binding Module Family 18.
GH19. Glycoside Hydrolase Family 19.

Proteomic databases

PRIDEiO24530.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi100233077.
KEGGivvi:100233077.

Phylogenomic databases

eggNOGiKOG4742. Eukaryota.
COG3979. LUCA.
KOiK01183.

Family and domain databases

Gene3Di3.30.60.10. 1 hit.
InterProiIPR001002. Chitin-bd_1.
IPR018371. Chitin-binding_1_CS.
IPR016283. Glyco_hydro_19.
IPR000726. Glyco_hydro_19_cat.
IPR023346. Lysozyme-like_dom.
[Graphical view]
PfamiPF00187. Chitin_bind_1. 1 hit.
PF00182. Glyco_hydro_19. 2 hits.
[Graphical view]
PIRSFiPIRSF001060. Endochitinase. 1 hit.
PRINTSiPR00451. CHITINBINDNG.
ProDomiPD000609. Chitin_bd_1. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00270. ChtBD1. 1 hit.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
SSF57016. SSF57016. 1 hit.
PROSITEiPS00026. CHIT_BIND_I_1. 1 hit.
PS50941. CHIT_BIND_I_2. 1 hit.
PS00773. CHITINASE_19_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "A class IV chitinase is highly expressed in grape berries during ripening."
    Robinson S.P., Jacobs A.K., Dry I.B.
    Plant Physiol. 114:771-778(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiO24530_VITVI
AccessioniPrimary (citable) accession number: O24530
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: May 11, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.