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Protein
Submitted name:

Plastid RNA polymerase sigma factor

Gene

sig1

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Plastid RNA polymerase sigma factorImported
Gene namesi
Name:sig1Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogonodaeAndropogoneaeSorghinaeSorghum

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb07g004340.1.

Structurei

3D structure databases

ProteinModelPortaliO24348.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini285 – 29814RNA_pol_sigma70InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG410IH2C. Eukaryota.
COG0568. LUCA.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O24348-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTATPAMIGL SAGKRLLATS FGNTDLAPPD AHPSLQFAPA APKLTVVAHR
60 70 80 90 100
ASASSSSSSS SPAGHARAHA IRALRNHSAP ALAPPLPLPL PPPPAADPAP
110 120 130 140 150
ELDSEFEFEL ESSLEAIVLL QRSMLEKQWQ LPFEDEDEDD ERLTKAAVVV
160 170 180 190 200
ARSGVSARQR RMSGRRRGPG RKSVTVSPEL MQSRNRIYLR GTVSKDLLTH
210 220 230 240 250
KQVIQLSRKI KDGIWLQHQR SKLKEKLGNE PSYKQLAQSL HISPPELRAR
260 270 280 290 300
MRESFLAREM LTMSNIRLVI SIAQKYDNLG VELADLIQGG LIGLLRGIEK
310 320 330 340 350
FDASRGFRIS TYVYWWIRQG VSRALADNSK AFRLPTYLHE RLIAIRGAKY
360 370 380 390 400
ALEDQGIAPT VENIAESLNI SEKKVHNATE AVNKVLSLDQ QAFPSLNGLP
410 420 430 440 450
GDTLHSYIED QNVANDPWHG FEERYLKEEV NNLINSNLNE RERDIIRLYH
460 470 480 490 500
GIGKQCHTWE DISRQFGLSR ERVRQVGLVA MEKLKHAARR KHLDALLEEY
Length:500
Mass (Da):55,975
Last modified:January 1, 1998 - v1
Checksum:iD320CC8DC4D7DAE6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y14276 mRNA. Translation: CAA74653.1.
PIRiT14826.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y14276 mRNA. Translation: CAA74653.1.
PIRiT14826.

3D structure databases

ProteinModelPortaliO24348.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4558.Sb07g004340.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG410IH2C. Eukaryota.
COG0568. LUCA.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Candidate cDNAs encoding a plastidial sigma factor of the dicot Arabidopsis thaliana and the monocot Sorghum bicolor."
    Kroll D., Streubel M., Westhoff P.
    Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: LeafImported.

Entry informationi

Entry nameiO24348_SORBI
AccessioniPrimary (citable) accession number: O24348
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: April 13, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.