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Protein
Submitted name:

Retrotransposon like protein

Gene

dl4760c

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Retrotransposon like proteinImported
Gene namesi
Name:dl4760cImported
Ordered Locus Names:At4g17450Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Structurei

3D structure databases

ProteinModelPortaliO23588.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini664 – 75895Integrase catalyticInterPro annotationAdd
BLAST

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
InterProiIPR025724. GAG-pre-integrase_dom.
IPR001584. Integrase_cat-core.
IPR005162. Retrotrans_gag_dom.
IPR012337. RNaseH-like_dom.
IPR013103. RVT_2.
IPR029472. UBN2_3.
[Graphical view]
PfamiPF13976. gag_pre-integrs. 1 hit.
PF14244. Retrotran_gag_3. 1 hit.
PF03732. Retrotrans_gag. 1 hit.
PF07727. RVT_2. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
PROSITEiPS50994. INTEGRASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O23588-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKQKKKTQN RSSSPTSEYS PMKTRAGSSY PVADDIVEPP SLKVMANRDR
60 70 80 90 100
FQSNSASIES YDNAHSPYFL HSSDHPGLNI VSHILDGTNY NNWSIAMRMS
110 120 130 140 150
LDAKNKLSFV DGSLPRPDVS DRMFKIWSRC NSMVKTWLLN VVTEMWNDLF
160 170 180 190 200
SRFRVSNLPR KYQLEQSIHT LKQGNLDLST YYTKKKTLWE QLANTRVLTV
210 220 230 240 250
RKCNCEHVKE LLEEAETSRI IQFLMGLNDN FAHIRGQILN MKPRPGLTEI
260 270 280 290 300
YNMLDQDESQ RLVGNPTLSN PTAAFQVQAS PIIDSQVNMA QGSYKKPKCS
310 320 330 340 350
YCNKLGHLVD KCYKKHGYPP GSKWTKGQTI GSTNLASTQL QPVNETPNEK
360 370 380 390 400
TDSYEEFSTD QIQTMISYLS TKLHIASASP MPTTSSASIS ASPSVPMISQ
410 420 430 440 450
ISGTFLSLFS NAYYDMLISS VSQEPAVSPR GWVIDSGATH HVTHNRDLYL
460 470 480 490 500
NFRSLENTFV RLPNDCTVKI AGIGFIQLSD AISLHNVLYI PEFKFNLISE
510 520 530 540 550
LTKELMIGRG SQVGNLYVLD FNENNHTVSL KGTTSMCPEF SVCSSVVVDS
560 570 580 590 600
VTWHKRLGHP AYSKIDLLSD VLNLKVKKIN KEHSPVCHVC HVCHLSKQKH
610 620 630 640 650
LSFQSRQNMC SAAFDLVHID TWGPFSVPTN DATWIYLLKN KSDVLHVFPA
660 670 680 690 700
FINMVHTQYQ TKLKSVRSDN AHELKFTDLF AAHGIVAYHS CPETPEQNSV
710 720 730 740 750
VERKHQHILN VARALLFQSN IPLEFWGDCV LTAVFLINRL PTPVLNNKSP
760 770 780 790 800
YEKLKNIPPA YESLKTFGCL CYSSTSPKQR HKFEPRARAC VFLGYPLGYK
810 820 830 840 850
GYKLLDIETH AVSISRHVIF HEDIFPFISS TIKDDIKDFF PLLQFPARTD
860 870 880 890 900
DLPLEQTSII DTHPHQDVSS SKALVPFDPL SKRQKKPPKH LQDFHCYNNT
910 920 930 940 950
TEPFHAFINN ITNAVIPQRY SEAKDFKAWC DAMKEEIGAM VRTNTWSVVS
960 970 980 990 1000
LPPNKKAIGC KWVFTIKHNA DGSIERYKAR LVAKGYTQEE GLDYEETFSP
1010 1020 1030 1040 1050
VAKLTSVRMM LLLAAKMKWS VHQLDISNAF LNGDLDEEIY MKIPPGYADL
1060 1070 1080 1090 1100
VGEALPPHAI CRLHKSIYGL KQASRQWYLK LSNTLKGMGF QKSNADHTLF
1110 1120 1130 1140 1150
IKYANGVLMG VLVYVDDIMI VSNSDDAVAQ FTAELKSYFK LRDLGAAKYF
1160 1170 1180 1190 1200
LGIEIARSEK GISICQRKYI LELLSTTGFL GSKPSSIPLD PSVKLNKEDG
1210 1220 1230 1240 1250
VPLTDSTSYR KLVGKLMYLQ ITRPDIAYAV NTLCQFSHAP TSVHLSAVHK
1260 1270 1280 1290 1300
VLRYLKGTVG QGLFYSADDK FDLRGYTDSD FGSCTDSRRC VAAYCMFIGD
1310 1320 1330 1340 1350
YLVSWKSKKQ DTVSMSTAEA EFRAMSQGTK EMIWLSRLFD DFKVPFIPPA
1360 1370 1380 1390 1400
YLYCDNTAAL HIVNNSVFHE RTKFVELDCY KTREAVESGF LKTMFVETGE
1410 1420 1430
QVADPLTKAI HPAQFHKLIG KMGVCNIFAP LPS
Length:1,433
Mass (Da):161,728
Last modified:January 1, 1998 - v1
Checksum:i89346A8C97B2CA46
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97343 Genomic DNA. Translation: CAB10526.1.
AL161546 Genomic DNA. Translation: CAB78748.1.
PIRiA71444.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97343 Genomic DNA. Translation: CAB10526.1.
AL161546 Genomic DNA. Translation: CAB78748.1.
PIRiA71444.

3D structure databases

ProteinModelPortaliO23588.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
InterProiIPR025724. GAG-pre-integrase_dom.
IPR001584. Integrase_cat-core.
IPR005162. Retrotrans_gag_dom.
IPR012337. RNaseH-like_dom.
IPR013103. RVT_2.
IPR029472. UBN2_3.
[Graphical view]
PfamiPF13976. gag_pre-integrs. 1 hit.
PF14244. Retrotran_gag_3. 1 hit.
PF03732. Retrotrans_gag. 1 hit.
PF07727. RVT_2. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
PROSITEiPS50994. INTEGRASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE.
  2. EU Arabidopsis sequencing project
    Submitted (JUN-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. EU Arabidopsis sequencing project
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiO23588_ARATH
AccessioniPrimary (citable) accession number: O23588
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: June 8, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.