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Protein

Expansin-like B1

Gene

EXLB1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Expansin-like B1
Short name:
At-EXPR1
Short name:
AtEXLB1
Short name:
AtEXPR1
Alternative name(s):
Ath-ExpBeta-3.1
Gene namesi
Name:EXLB1
Synonyms:EXPR1
Ordered Locus Names:At4g17030
ORF Names:dl4545c
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G17030.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 24Sequence analysisAdd BLAST24
ChainiPRO_000000871525 – 250Expansin-like B1Add BLAST226

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi72N-linked (GlcNAc...)Sequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiO23547.

Expressioni

Gene expression databases

ExpressionAtlasiO23547. baseline and differential.
GenevisibleiO23547. AT.

Interactioni

Protein-protein interaction databases

BioGridi12704. 2 interactors.
IntActiO23547. 2 interactors.
STRINGi3702.AT4G17030.1.

Structurei

3D structure databases

ProteinModelPortaliO23547.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini45 – 149Expansin-like EG45PROSITE-ProRule annotationAdd BLAST105
Domaini163 – 245Expansin-like CBDPROSITE-ProRule annotationAdd BLAST83

Sequence similaritiesi

Contains 1 expansin-like CBD domain.PROSITE-ProRule annotation
Contains 1 expansin-like EG45 domain.PROSITE-ProRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IG96. Eukaryota.
ENOG41115SZ. LUCA.
HOGENOMiHOG000220794.
InParanoidiO23547.
OMAiRDINNGE.
OrthoDBiEOG09360I7M.
PhylomeDBiO23547.

Family and domain databases

Gene3Di2.40.40.10. 1 hit.
2.60.40.760. 1 hit.
InterProiIPR007118. Expan_Lol_pI.
IPR007112. Expansin/allergen_DPBB_dom.
IPR007117. Expansin_CBD.
IPR005795. LolPI.
IPR009009. RlpA-like_DPBB.
[Graphical view]
PfamiPF03330. DPBB_1. 1 hit.
PF01357. Pollen_allerg_1. 1 hit.
[Graphical view]
PRINTSiPR01225. EXPANSNFAMLY.
PR00829. LOLP1ALLERGN.
SUPFAMiSSF49590. SSF49590. 1 hit.
SSF50685. SSF50685. 1 hit.
PROSITEiPS50843. EXPANSIN_CBD. 1 hit.
PS50842. EXPANSIN_EG45. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O23547-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKHSHVLLLL FVQVIVLLPL LCLSDDFVNS RATYYGSPDC KANPRGHCGY
60 70 80 90 100
GEFGRDINNG EVSGVSWRLW NNGTGCGACY QVRCKIPPHC SEEGVYVVAT
110 120 130 140 150
DSGEGDGTDF ILSPKAYGRM ARPGTENQLY SFGVVNVEYQ RIPCRYAGYN
160 170 180 190 200
LVYKIHEKSY NPHYLAILVL YVGGVNDILA VEVWQEDCKE WRRMRRVFGA
210 220 230 240 250
VHDLQNPPRG TLTLRFLVYG SAGINWIQSP NAIPADWTAG ATYDSNILLT
Length:250
Mass (Da):27,934
Last modified:August 2, 2002 - v2
Checksum:i62037805251ACC4A
GO

Sequence cautioni

The sequence CAB10483 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB80974 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97342 Genomic DNA. Translation: CAB10483.1. Sequence problems.
AL161545 Genomic DNA. Translation: CAB80974.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE83841.1.
BT005867 mRNA. Translation: AAO64802.1.
RefSeqiNP_193436.2. NM_117807.3.
UniGeneiAt.33028.

Genome annotation databases

EnsemblPlantsiAT4G17030.1; AT4G17030.1; AT4G17030.
GeneIDi827411.
GrameneiAT4G17030.1; AT4G17030.1; AT4G17030.
KEGGiath:AT4G17030.

Cross-referencesi

Web resourcesi

EXPANSIN homepage

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97342 Genomic DNA. Translation: CAB10483.1. Sequence problems.
AL161545 Genomic DNA. Translation: CAB80974.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE83841.1.
BT005867 mRNA. Translation: AAO64802.1.
RefSeqiNP_193436.2. NM_117807.3.
UniGeneiAt.33028.

3D structure databases

ProteinModelPortaliO23547.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi12704. 2 interactors.
IntActiO23547. 2 interactors.
STRINGi3702.AT4G17030.1.

Proteomic databases

PaxDbiO23547.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G17030.1; AT4G17030.1; AT4G17030.
GeneIDi827411.
GrameneiAT4G17030.1; AT4G17030.1; AT4G17030.
KEGGiath:AT4G17030.

Organism-specific databases

TAIRiAT4G17030.

Phylogenomic databases

eggNOGiENOG410IG96. Eukaryota.
ENOG41115SZ. LUCA.
HOGENOMiHOG000220794.
InParanoidiO23547.
OMAiRDINNGE.
OrthoDBiEOG09360I7M.
PhylomeDBiO23547.

Miscellaneous databases

PROiO23547.

Gene expression databases

ExpressionAtlasiO23547. baseline and differential.
GenevisibleiO23547. AT.

Family and domain databases

Gene3Di2.40.40.10. 1 hit.
2.60.40.760. 1 hit.
InterProiIPR007118. Expan_Lol_pI.
IPR007112. Expansin/allergen_DPBB_dom.
IPR007117. Expansin_CBD.
IPR005795. LolPI.
IPR009009. RlpA-like_DPBB.
[Graphical view]
PfamiPF03330. DPBB_1. 1 hit.
PF01357. Pollen_allerg_1. 1 hit.
[Graphical view]
PRINTSiPR01225. EXPANSNFAMLY.
PR00829. LOLP1ALLERGN.
SUPFAMiSSF49590. SSF49590. 1 hit.
SSF50685. SSF50685. 1 hit.
PROSITEiPS50843. EXPANSIN_CBD. 1 hit.
PS50842. EXPANSIN_EG45. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiEXLB1_ARATH
AccessioniPrimary (citable) accession number: O23547
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 5, 2002
Last sequence update: August 2, 2002
Last modified: November 30, 2016
This is version 125 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.