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Protein
Submitted name:

Retrovirus-related like polyprotein

Gene

dl3270w

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Retrovirus-related like polyproteinImported
Gene namesi
Name:dl3270wImported
Ordered Locus Names:At4g14460Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini628 – 791164Integrase catalyticInterPro annotationAdd
BLAST

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
InterProiIPR025724. GAG-pre-integrase_dom.
IPR001584. Integrase_cat-core.
IPR005162. Retrotrans_gag_dom.
IPR012337. RNaseH-like_dom.
IPR013103. RVT_2.
IPR029472. UBN2_3.
[Graphical view]
PfamiPF13976. gag_pre-integrs. 1 hit.
PF14244. Retrotran_gag_3. 1 hit.
PF03732. Retrotrans_gag. 1 hit.
PF00665. rve. 1 hit.
PF07727. RVT_2. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
PROSITEiPS50994. INTEGRASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O23302-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGSYVPPPAN PVTRPPINNG DQIRYPVDQY ENPYYLHSAD HAGLILVSDR
60 70 80 90 100
LTTASDFHSW RRSILMALNV RNKLGFINGT ITKPPEDHRD FGAWSRCNDI
110 120 130 140 150
VSTWLMNSVD KKIGQSLLYI ATVQGIWNNL LSRFKQDDAP RIFDIEQKLS
160 170 180 190 200
KIEQGSMDIS TYYTALLTLW EEHRNYVELP VCTCGRCECD AAVKWEHLQQ
210 220 230 240 250
RSRVTKFLKE LNEGFDQTRR HILMLKPIPT IKEAFNMVTQ DERQRNVKPL
260 270 280 290 300
TRVDSVAFQN TSMINEDENA YVAAYNTVRP NQKPICTHCG KVGHTIQKCY
310 320 330 340 350
KVHGYPPGMK TGNTGYTYKP NPQLHVQPRM PMMPQPRMQF PAQPYTNSMQ
360 370 380 390 400
KANVVAQVYA ETGAYPSEGY SQAPMMNPYG SYPMPHITHG GNNLSLQDFT
410 420 430 440 450
PQQIEQMISQ FQAQVQVPEP AASSSNPSPL ATVSEHGFMA LTSTSGTIIP
460 470 480 490 500
FPSTSLKYEN NDLKFQNHTL SALQKFLPSD AWIIDSGASS HVCSDLAMFR
510 520 530 540 550
ELKSVSGTVH ITQKLILHNV LHVPDFKFNL MSVSSLVKTI SCSAHFYVDC
560 570 580 590 600
CLIQELSQGL MIGRGRLYHN LYILETENTS PSTSTPAACL FTGSVLNDGH
610 620 630 640 650
LWHQRLGHPS SVVLQKLKRL AYISHNNLAS NPFDLVHLDI WGPFSIESIE
660 670 680 690 700
GFRYFLTVVD DCTRTTWVYM LRNKKDVSSV FPEFIKLVST QFNAKIKAIR
710 720 730 740 750
SDNAPELGFT EIVKEHGMLH HFSCAYTPQQ NSVVERKHQH ILNVARALLF
760 770 780 790 800
QSNIPMQYWS DCVTTAVFLI NRLPSPLLNN KSPYELILNK QPDYSLLKNF
810 820 830 840 850
GCLCFVSTNA HERTKFTPRA RACVFLGYPS GYKGYKVLDL ESHSVTVSRN
860 870 880 890 900
VVFKEHVFPF KTSELLNKAV DMFPNSILPL PAPLHFVETM PLIDEDSLIP
910 920 930 940 950
TTTDSRTADN HASSSSSALP SIIPPSSNTE TQDIDSNAVP ITRSKRTTRA
960 970 980 990 1000
PSYLSEYHCS LVPSISTLPP TDSSIPIHPL PEIFTASSPK KTTPYPISTV
1010 1020 1030 1040 1050
VSYDKYTPLC QSYIFAYNTE TEPKTFSQAM KSEKWIRVAV EELQAMELNK
1060 1070 1080 1090 1100
TWSVESLPPD KNVVGCKWVF TIKYNPDGTV ERYKARLVAQ GFTQQEGIDF
1110 1120 1130 1140 1150
LDTFSPVAKL TSAKMMLGLA AITGWTLTQM DVSDAFLHGD LDEEIFMSLP
1160 1170 1180 1190 1200
QGYTPPAGTI LPPNPVCRLL KSIYGLKQAS RQWYKRFVAA LVYIDDIMIA
1210 1220 1230 1240 1250
SNNDAEVENL KALLRSEFKI KDLGPARFFL GLLGCKPSSI PMDPTLHLVR
1260 1270 1280 1290 1300
DMGTPLPNPT AYRKLIGRLL YLTITRPDIT YAVHQLSQFI SAPSDIHLQA
1310 1320 1330 1340 1350
AHKVLRYIKA NPGQGLMYSA DYEICLNGFS DADWAACKDT RRSISGFCIY
1360 1370 1380 1390 1400
LGTSLISWKS KKQAVASRSS TESEYRSMAQ ATCEIIWLQQ LLKDLHIPLT
1410 1420 1430 1440 1450
CPAKLFCDNK SALHSSLNPV FHERTKHIEI DCHTVRDQIK AGNLKALHVP
1460 1470 1480
TENQHADILT KALHPGPFHH LLRQMSLSSL FLPNKPVRS
Length:1,489
Mass (Da):167,518
Last modified:January 1, 1998 - v1
Checksum:iAB391B7428C148C0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97336 Genomic DNA. Translation: CAB10225.1.
AL161539 Genomic DNA. Translation: CAB78488.1.
PIRiG71406.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97336 Genomic DNA. Translation: CAB10225.1.
AL161539 Genomic DNA. Translation: CAB78488.1.
PIRiG71406.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
InterProiIPR025724. GAG-pre-integrase_dom.
IPR001584. Integrase_cat-core.
IPR005162. Retrotrans_gag_dom.
IPR012337. RNaseH-like_dom.
IPR013103. RVT_2.
IPR029472. UBN2_3.
[Graphical view]
PfamiPF13976. gag_pre-integrs. 1 hit.
PF14244. Retrotran_gag_3. 1 hit.
PF03732. Retrotrans_gag. 1 hit.
PF00665. rve. 1 hit.
PF07727. RVT_2. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
PROSITEiPS50994. INTEGRASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO23302_ARATH
AccessioniPrimary (citable) accession number: O23302
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: July 6, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.