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Protein

60S ribosomal protein L36a

Gene

RPL36AA

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L36a
Gene namesi
Name:RPL36AA
Ordered Locus Names:At3g23390
ORF Names:MLM24.22
AND
Name:RPL36AB
Ordered Locus Names:At4g14320
ORF Names:dl3200c, FCAALL.124
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componentsi: Chromosome 3, Chromosome 4

Organism-specific databases

AraportiAT3G23390
AT4G14320
TAIRilocus:2090885 AT3G23390

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001491311 – 10560S ribosomal protein L36aAdd BLAST105

Proteomic databases

PaxDbiO23290
PRIDEiO23290

Expressioni

Gene expression databases

ExpressionAtlasiO23290 baseline and differential
GenevisibleiO23290 AT

Interactioni

Protein-protein interaction databases

BioGridi7252, 5 interactors
IntActiO23290, 2 interactors
STRINGi3702.AT3G23390.1

Structurei

3D structure databases

ProteinModelPortaliO23290
SMRiO23290
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3464 Eukaryota
COG1631 LUCA
HOGENOMiHOG000224989
InParanoidiO23290
KOiK02929
OMAiYGGFPRP
OrthoDBiEOG09360UDO
PhylomeDBiO23290

Family and domain databases

InterProiView protein in InterPro
IPR000552 Ribosomal_L44e
IPR011332 Ribosomal_zn-bd
PANTHERiPTHR10369 PTHR10369, 1 hit
PfamiView protein in Pfam
PF00935 Ribosomal_L44, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD002841 Ribosomal_L44e, 1 hit
SUPFAMiSSF57829 SSF57829, 1 hit
PROSITEiView protein in PROSITE
PS01172 RIBOSOMAL_L44E, 1 hit

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: O23290-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY
60 70 80 90 100
GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK

GTSLF
Length:105
Mass (Da):12,125
Last modified:January 23, 2007 - v3
Checksum:i3FEF719858846A5A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB015474 Genomic DNA Translation: BAB02283.1
Z97336 Genomic DNA Translation: CAB10211.1
AL161538 Genomic DNA Translation: CAB78474.1
CP002686 Genomic DNA Translation: AEE76760.1
CP002687 Genomic DNA Translation: AEE83418.1
AY062855 mRNA Translation: AAL32933.1
BT001193 mRNA Translation: AAN65080.1
AY065121 mRNA Translation: AAL38297.1
AY081639 mRNA Translation: AAM10201.1
AY085174 mRNA Translation: AAM61725.1
AY085784 mRNA Translation: AAM63001.1
PIRiA71405
RefSeqiNP_188981.1, NM_113242.4 [O23290-1]
NP_193168.1, NM_117509.3 [O23290-1]
UniGeneiAt.24570
At.28618

Genome annotation databases

EnsemblPlantsiAT3G23390.1; AT3G23390.1; AT3G23390 [O23290-1]
AT4G14320.1; AT4G14320.1; AT4G14320 [O23290-1]
GeneIDi821920
827074
GrameneiAT3G23390.1; AT3G23390.1; AT3G23390 [O23290-1]
AT4G14320.1; AT4G14320.1; AT4G14320 [O23290-1]
KEGGiath:AT3G23390
ath:AT4G14320

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiRL36A_ARATH
AccessioniPrimary (citable) accession number: O23290
Secondary accession number(s): Q7GD84
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: January 23, 2007
Last modified: April 25, 2018
This is version 127 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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