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Protein

60S ribosomal protein L36a

Gene

RPL36AA

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L36a
Gene namesi
Name:RPL36AA
Ordered Locus Names:At3g23390
ORF Names:MLM24.22
AND
Name:RPL36AB
Ordered Locus Names:At4g14320
ORF Names:dl3200c, FCAALL.124
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componentsi: Chromosome 3, Chromosome 4

Organism-specific databases

TAIRiAT3G23390.
AT4G14320.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10510560S ribosomal protein L36aPRO_0000149131Add
BLAST

Proteomic databases

PaxDbiO23290.
PRIDEiO23290.

Expressioni

Gene expression databases

ExpressionAtlasiO23290. baseline and differential.
GenevisibleiO23290. AT.

Interactioni

Protein-protein interaction databases

BioGridi7252. 5 interactions.
IntActiO23290. 2 interactions.
STRINGi3702.AT3G23390.1.

Structurei

3D structure databases

ProteinModelPortaliO23290.
SMRiO23290. Positions 2-96.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L44e family.Curated

Phylogenomic databases

eggNOGiKOG3464. Eukaryota.
COG1631. LUCA.
HOGENOMiHOG000224989.
InParanoidiO23290.
KOiK02929.
OMAiVCKTKAQ.
OrthoDBiEOG09360UDO.
PhylomeDBiO23290.

Family and domain databases

Gene3Di3.10.450.80. 1 hit.
InterProiIPR000552. Ribosomal_L44e.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR10369. PTHR10369. 1 hit.
PfamiPF00935. Ribosomal_L44. 1 hit.
[Graphical view]
ProDomiPD002841. Ribosomal_L44e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiPS01172. RIBOSOMAL_L44E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: O23290-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY
60 70 80 90 100
GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK

GTSLF
Length:105
Mass (Da):12,125
Last modified:January 23, 2007 - v3
Checksum:i3FEF719858846A5A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB015474 Genomic DNA. Translation: BAB02283.1.
Z97336 Genomic DNA. Translation: CAB10211.1.
AL161538 Genomic DNA. Translation: CAB78474.1.
CP002686 Genomic DNA. Translation: AEE76760.1.
CP002687 Genomic DNA. Translation: AEE83418.1.
AY062855 mRNA. Translation: AAL32933.1.
BT001193 mRNA. Translation: AAN65080.1.
AY065121 mRNA. Translation: AAL38297.1.
AY081639 mRNA. Translation: AAM10201.1.
AY085174 mRNA. Translation: AAM61725.1.
AY085784 mRNA. Translation: AAM63001.1.
PIRiA71405.
RefSeqiNP_188981.1. NM_113242.3. [O23290-1]
NP_193168.1. NM_117509.2. [O23290-1]
UniGeneiAt.24570.
At.28618.

Genome annotation databases

EnsemblPlantsiAT3G23390.1; AT3G23390.1; AT3G23390. [O23290-1]
AT4G14320.1; AT4G14320.1; AT4G14320. [O23290-1]
GeneIDi821920.
827074.
KEGGiath:AT3G23390.
ath:AT4G14320.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB015474 Genomic DNA. Translation: BAB02283.1.
Z97336 Genomic DNA. Translation: CAB10211.1.
AL161538 Genomic DNA. Translation: CAB78474.1.
CP002686 Genomic DNA. Translation: AEE76760.1.
CP002687 Genomic DNA. Translation: AEE83418.1.
AY062855 mRNA. Translation: AAL32933.1.
BT001193 mRNA. Translation: AAN65080.1.
AY065121 mRNA. Translation: AAL38297.1.
AY081639 mRNA. Translation: AAM10201.1.
AY085174 mRNA. Translation: AAM61725.1.
AY085784 mRNA. Translation: AAM63001.1.
PIRiA71405.
RefSeqiNP_188981.1. NM_113242.3. [O23290-1]
NP_193168.1. NM_117509.2. [O23290-1]
UniGeneiAt.24570.
At.28618.

3D structure databases

ProteinModelPortaliO23290.
SMRiO23290. Positions 2-96.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi7252. 5 interactions.
IntActiO23290. 2 interactions.
STRINGi3702.AT3G23390.1.

Proteomic databases

PaxDbiO23290.
PRIDEiO23290.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G23390.1; AT3G23390.1; AT3G23390. [O23290-1]
AT4G14320.1; AT4G14320.1; AT4G14320. [O23290-1]
GeneIDi821920.
827074.
KEGGiath:AT3G23390.
ath:AT4G14320.

Organism-specific databases

TAIRiAT3G23390.
AT4G14320.

Phylogenomic databases

eggNOGiKOG3464. Eukaryota.
COG1631. LUCA.
HOGENOMiHOG000224989.
InParanoidiO23290.
KOiK02929.
OMAiVCKTKAQ.
OrthoDBiEOG09360UDO.
PhylomeDBiO23290.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiO23290.

Gene expression databases

ExpressionAtlasiO23290. baseline and differential.
GenevisibleiO23290. AT.

Family and domain databases

Gene3Di3.10.450.80. 1 hit.
InterProiIPR000552. Ribosomal_L44e.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR10369. PTHR10369. 1 hit.
PfamiPF00935. Ribosomal_L44. 1 hit.
[Graphical view]
ProDomiPD002841. Ribosomal_L44e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiPS01172. RIBOSOMAL_L44E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL36A_ARATH
AccessioniPrimary (citable) accession number: O23290
Secondary accession number(s): Q7GD84
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: January 23, 2007
Last modified: September 7, 2016
This is version 114 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.