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Protein

Arginine--tRNA ligase, chloroplastic/mitochondrial

Gene

EMB1027

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Forms part of a macromolecular complex that catalyzes the attachment of specific amino acids to cognate tRNAs during protein synthesis.By similarity

Catalytic activityi

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg).Curated

GO - Molecular functioni

GO - Biological processi

  • arginyl-tRNA aminoacylation Source: GO_Central
  • embryo development ending in seed dormancy Source: TAIR

Keywordsi

Molecular functionAminoacyl-tRNA synthetase, Ligase
Biological processProtein biosynthesis
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Arginine--tRNA ligase, chloroplastic/mitochondrialCurated (EC:6.1.1.19Curated)
Alternative name(s):
Arginyl-tRNA synthetaseCurated
Short name:
ArgRSCurated
Protein EMBRYO DEFECTIVE 10271 Publication
Gene namesi
Name:EMB10271 Publication
Ordered Locus Names:At4g26300Imported
ORF Names:T25K17.110Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G26300
TAIRilocus:2136794 AT4G26300

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Mitochondrion, Plastid

Pathology & Biotechi

Disruption phenotypei

Embryo defective. Developmental arrest of the embryo at the globular stage.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 53Chloroplast and mitochondrionCombined sourcesAdd BLAST53
ChainiPRO_000043355254 – 642Arginine--tRNA ligase, chloroplastic/mitochondrialCuratedAdd BLAST589

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei54N-acetylalanineCombined sources1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiO23247
PRIDEiO23247

PTM databases

iPTMnetiO23247

Expressioni

Gene expression databases

ExpressionAtlasiO23247 baseline and differential
GenevisibleiO23247 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G26300.1

Structurei

3D structure databases

ProteinModelPortaliO23247
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi190 – 201"HIGH" regionCuratedAdd BLAST12

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiKOG4426 Eukaryota
COG0018 LUCA
HOGENOMiHOG000247212
InParanoidiO23247
KOiK01887
OMAiNKPLHLG
OrthoDBiEOG09360567
PhylomeDBiO23247

Family and domain databases

CDDicd00671 ArgRS_core, 1 hit
Gene3Di3.30.1360.70, 1 hit
3.40.50.620, 1 hit
HAMAPiMF_00123 Arg_tRNA_synth, 1 hit
InterProiView protein in InterPro
IPR001412 aa-tRNA-synth_I_CS
IPR001278 Arg-tRNA-ligase
IPR005148 Arg-tRNA-synth_N
IPR036695 Arg-tRNA-synth_N_sf
IPR035684 ArgRS_core
IPR008909 DALR_anticod-bd
IPR014729 Rossmann-like_a/b/a_fold
IPR009080 tRNAsynth_Ia_anticodon-bd
PANTHERiPTHR11956 PTHR11956, 1 hit
PfamiView protein in Pfam
PF03485 Arg_tRNA_synt_N, 1 hit
PF05746 DALR_1, 1 hit
PF00750 tRNA-synt_1d, 1 hit
PRINTSiPR01038 TRNASYNTHARG
SMARTiView protein in SMART
SM01016 Arg_tRNA_synt_N, 1 hit
SM00836 DALR_1, 1 hit
SUPFAMiSSF47323 SSF47323, 1 hit
SSF55190 SSF55190, 1 hit
TIGRFAMsiTIGR00456 argS, 1 hit
PROSITEiView protein in PROSITE
PS00178 AA_TRNA_LIGASE_I, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O23247-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFIFPKDENR RETLTTKLRF SADHLTFTTV TEKLRATAWR FAFSSRAKSV
60 70 80 90 100
VAMAANEEFT GNLKRQLAKL FDVSLKLTVP DEPSVEPLVA ASALGKFGDY
110 120 130 140 150
QCNNAMGLWS IIKGKGTQFK GPPAVGQALV KSLPTSEMVE SCSVAGPGFI
160 170 180 190 200
NVVLSAKWMA KSIENMLIDG VDTWAPTLSV KRAVVDFSSP NIAKEMHVGH
210 220 230 240 250
LRSTIIGDTL ARMLEYSHVE VLRRNHVGDW GTQFGMLIEY LFEKFPDTDS
260 270 280 290 300
VTETAIGDLQ VFYKASKHKF DLDEAFKEKA QQAVVRLQGG DPVYRKAWAK
310 320 330 340 350
ICDISRTEFA KVYQRLRVEL EEKGESFYNP HIAKVIEELN SKGLVEESEG
360 370 380 390 400
ARVIFLEGFD IPLMVVKSDG GFNYASTDLT ALWYRLNEEK AEWIIYVTDV
410 420 430 440 450
GQQQHFNMFF KAARKAGWLP DNDKTYPRVN HVGFGLVLGE DGKRFRTRAT
460 470 480 490 500
DVVRLVDLLD EAKTRSKLAL IERGKDKEWT PEELDQTAEA VGYGAVKYAD
510 520 530 540 550
LKNNRLTNYT FSFDQMLNDK GNTAVYLLYA HARICSIIRK SGKDIDELKK
560 570 580 590 600
TGKLALDHAD ERALGLHLLR FAETVEEACT NLLPSVLCEY LYNLSEHFTR
610 620 630 640
FYSNCQVNGS PEETSRLLLC EATAIVMRKC FHLLGITPVY KI
Length:642
Mass (Da):72,387
Last modified:January 1, 1998 - v1
Checksum:i0CE2674AE2BBEEFC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z98760 Genomic DNA Translation: CAB11468.1
AL049171 Genomic DNA Translation: CAB38959.1
AL161565 Genomic DNA Translation: CAB79485.1
CP002687 Genomic DNA Translation: AEE85182.1
PIRiT06014
RefSeqiNP_194360.1, NM_118763.3
UniGeneiAt.42946
At.75603

Genome annotation databases

EnsemblPlantsiAT4G26300.1; AT4G26300.1; AT4G26300
GeneIDi828736
GrameneiAT4G26300.1; AT4G26300.1; AT4G26300
KEGGiath:AT4G26300

Similar proteinsi

Entry informationi

Entry nameiSYRM_ARATH
AccessioniPrimary (citable) accession number: O23247
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 22, 2015
Last sequence update: January 1, 1998
Last modified: May 23, 2018
This is version 140 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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