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Protein

Homeobox-leucine zipper protein ATHB-40

Gene

ATHB-40

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Probable transcription factor.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi52 – 111HomeoboxPROSITE-ProRule annotationAdd BLAST60

GO - Molecular functioni

  • DNA binding transcription factor activity Source: TAIR
  • sequence-specific DNA binding Source: InterPro

GO - Biological processi

  • response to auxin Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processStress response, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Homeobox-leucine zipper protein ATHB-40
Alternative name(s):
HD-ZIP protein ATHB-40
Homeodomain transcription factor ATHB-40
Gene namesi
Name:ATHB-40
Ordered Locus Names:At4g36740
ORF Names:C7A10.620
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G36740
TAIRilocus:2115215 AT4G36740

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002578011 – 216Homeobox-leucine zipper protein ATHB-40Add BLAST216

Proteomic databases

PaxDbiO23208

Expressioni

Tissue specificityi

Expressed in roots, flowers and siliques.1 Publication

Inductioni

By abscisic acid (ABA) and by salt stress.1 Publication

Gene expression databases

ExpressionAtlasiO23208 baseline and differential
GenevisibleiO23208 AT

Interactioni

Protein-protein interaction databases

BioGridi15108, 2 interactors
STRINGi3702.AT4G36740.1

Structurei

3D structure databases

ProteinModelPortaliO23208
SMRiO23208
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni112 – 140Leucine-zipperAdd BLAST29

Sequence similaritiesi

Keywords - Domaini

Homeobox

Phylogenomic databases

eggNOGiKOG0483 Eukaryota
ENOG410Z2UE LUCA
HOGENOMiHOG000034122
InParanoidiO23208
KOiK09338
OMAiLKNEHET
OrthoDBiEOG09360OA8
PhylomeDBiO23208

Family and domain databases

CDDicd00086 homeodomain, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017970 Homeobox_CS
IPR001356 Homeobox_dom
IPR000047 HTH_motif
PfamiView protein in Pfam
PF00046 Homeobox, 1 hit
PRINTSiPR00031 HTHREPRESSR
SMARTiView protein in SMART
SM00389 HOX, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS00027 HOMEOBOX_1, 1 hit
PS50071 HOMEOBOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

O23208-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNYTVDDQNM AFISQLYPDV YTQIVQPGEV KQPKRRRKKT KGSVASADGG
60 70 80 90 100
NGLFRKRKLT DEQVNMLEMS FGDEHKLESE RKDRLAAELG LDPRQVAVWF
110 120 130 140 150
QNRRARWKNK RLEEEYNKLK NSHDNVVVDK CRLESEVIQL KEQLYDAERE
160 170 180 190 200
IQRLAERVEG GSSNSPISSS VSVEANETPF FGDYKVGDDG DDYDHLFYPV
210
PENSYIDEAE WMSLYI
Length:216
Mass (Da):25,080
Last modified:February 8, 2011 - v3
Checksum:i3847152AB0A4BBF5
GO

Sequence cautioni

The sequence CAB16824 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB80340 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti103 – 104RR → LC in BX827896 (PubMed:14993207).Curated2
Sequence conflicti146D → Y in BX827896 (PubMed:14993207).Curated1
Sequence conflicti195H → Y in BX827896 (PubMed:14993207).Curated1
Sequence conflicti207D → A in BX827896 (PubMed:14993207).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z99708 Genomic DNA Translation: CAB16824.1 Sequence problems.
AL161589 Genomic DNA Translation: CAB80340.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE86696.1
BX827896 mRNA No translation available.
PIRiH85433
RefSeqiNP_001329011.1, NM_001342415.1
NP_195392.2, NM_119838.3
UniGeneiAt.50404

Genome annotation databases

EnsemblPlantsiAT4G36740.1; AT4G36740.1; AT4G36740
GeneIDi829827
GrameneiAT4G36740.1; AT4G36740.1; AT4G36740
KEGGiath:AT4G36740

Similar proteinsi

Entry informationi

Entry nameiATB40_ARATH
AccessioniPrimary (citable) accession number: O23208
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: February 8, 2011
Last modified: April 25, 2018
This is version 125 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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