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Protein

CBS domain-containing protein CBSX1, chloroplastic

Gene

CBSX1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • cell redox homeostasis Source: TAIR
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
CBS domain-containing protein CBSX1, chloroplastic
Alternative name(s):
CBS domain-containing protein 2
Short name:
AtCDCP2
Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2
Short name:
AtLEJ2
Gene namesi
Name:CBSX1
Synonyms:CDCP2
Ordered Locus Names:At4g36910
ORF Names:AP22.61, C7A10.450
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G36910.

Subcellular locationi

GO - Cellular componenti

  • chloroplast Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 53ChloroplastCombined sourcesAdd BLAST53
ChainiPRO_000040398854 – 236CBS domain-containing protein CBSX1, chloroplasticAdd BLAST183

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei54N-acetylserineCombined sources1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiO23193.

Expressioni

Gene expression databases

GenevisibleiO23193. AT.

Interactioni

Protein-protein interaction databases

BioGridi15125. 4 interactors.
IntActiO23193. 4 interactors.
STRINGi3702.AT4G36910.1.

Structurei

Secondary structure

1236
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi77 – 79Combined sources3
Beta strandi81 – 84Combined sources4
Helixi96 – 105Combined sources10
Beta strandi109 – 114Combined sources6
Beta strandi119 – 125Combined sources7
Helixi126 – 129Combined sources4
Helixi154 – 160Combined sources7
Helixi171 – 174Combined sources4
Beta strandi175 – 178Combined sources4
Beta strandi182 – 187Combined sources6
Helixi188 – 197Combined sources10
Beta strandi202 – 206Combined sources5
Beta strandi210 – 217Combined sources8
Helixi218 – 226Combined sources9

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4GQVX-ray2.39A72-236[»]
4GQWX-ray2.20A72-134[»]
A150-236[»]
ProteinModelPortaliO23193.
SMRiO23193.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini81 – 142CBS 1PROSITE-ProRule annotationAdd BLAST62
Domaini175 – 231CBS 2PROSITE-ProRule annotationAdd BLAST57

Sequence similaritiesi

Contains 2 CBS domains.PROSITE-ProRule annotation

Keywords - Domaini

CBS domain, Repeat, Transit peptide

Phylogenomic databases

eggNOGiENOG410IY0M. Eukaryota.
ENOG4111TWY. LUCA.
HOGENOMiHOG000187907.
InParanoidiO23193.
OMAiENSMFPE.
OrthoDBiEOG09360OHX.
PhylomeDBiO23193.

Family and domain databases

InterProiIPR000644. CBS_dom.
[Graphical view]
PfamiPF00571. CBS. 2 hits.
[Graphical view]
SMARTiSM00116. CBS. 2 hits.
[Graphical view]
PROSITEiPS51371. CBS. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O23193-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS
60 70 80 90 100
RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
110 120 130 140 150
ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD
160 170 180 190 200
STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
210 220 230
RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA
Length:236
Mass (Da):25,769
Last modified:May 1, 1999 - v2
Checksum:iAE5D224F42A997D9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z99707 Genomic DNA. Translation: CAB16799.1.
AL161590 Genomic DNA. Translation: CAB80357.1.
CP002687 Genomic DNA. Translation: AEE86716.1.
AY085164 mRNA. Translation: AAM61717.1.
BT003835 mRNA. Translation: AAO41886.1.
BT005190 mRNA. Translation: AAO50723.1.
PIRiH85435.
RefSeqiNP_195409.1. NM_119855.4.
UniGeneiAt.31287.
At.65827.

Genome annotation databases

EnsemblPlantsiAT4G36910.1; AT4G36910.1; AT4G36910.
GeneIDi829844.
GrameneiAT4G36910.1; AT4G36910.1; AT4G36910.
KEGGiath:AT4G36910.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z99707 Genomic DNA. Translation: CAB16799.1.
AL161590 Genomic DNA. Translation: CAB80357.1.
CP002687 Genomic DNA. Translation: AEE86716.1.
AY085164 mRNA. Translation: AAM61717.1.
BT003835 mRNA. Translation: AAO41886.1.
BT005190 mRNA. Translation: AAO50723.1.
PIRiH85435.
RefSeqiNP_195409.1. NM_119855.4.
UniGeneiAt.31287.
At.65827.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4GQVX-ray2.39A72-236[»]
4GQWX-ray2.20A72-134[»]
A150-236[»]
ProteinModelPortaliO23193.
SMRiO23193.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi15125. 4 interactors.
IntActiO23193. 4 interactors.
STRINGi3702.AT4G36910.1.

Proteomic databases

PaxDbiO23193.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G36910.1; AT4G36910.1; AT4G36910.
GeneIDi829844.
GrameneiAT4G36910.1; AT4G36910.1; AT4G36910.
KEGGiath:AT4G36910.

Organism-specific databases

TAIRiAT4G36910.

Phylogenomic databases

eggNOGiENOG410IY0M. Eukaryota.
ENOG4111TWY. LUCA.
HOGENOMiHOG000187907.
InParanoidiO23193.
OMAiENSMFPE.
OrthoDBiEOG09360OHX.
PhylomeDBiO23193.

Miscellaneous databases

PROiO23193.

Gene expression databases

GenevisibleiO23193. AT.

Family and domain databases

InterProiIPR000644. CBS_dom.
[Graphical view]
PfamiPF00571. CBS. 2 hits.
[Graphical view]
SMARTiSM00116. CBS. 2 hits.
[Graphical view]
PROSITEiPS51371. CBS. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiCBSX1_ARATH
AccessioniPrimary (citable) accession number: O23193
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 8, 2011
Last sequence update: May 1, 1999
Last modified: November 30, 2016
This is version 100 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.