Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

50S ribosomal protein L6, chloroplastic

Gene

RPL6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

This protein binds directly to 23S ribosomal RNA and is located at the aminoacyl-tRNA binding site of the peptidyltransferase center.By similarity

GO - Molecular functioni

GO - Biological processi

  • response to cytokinin Source: TAIR
  • translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6, chloroplastic
Alternative name(s):
Protein EMBRYO DEFECTIVE 2394
Gene namesi
Name:RPL6
Synonyms:EMB2394
Ordered Locus Names:At1g05190
ORF Names:YUP8H12.20
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G05190.

Subcellular locationi

GO - Cellular componenti

  • chloroplast Source: TAIR
  • chloroplast envelope Source: TAIR
  • chloroplast stroma Source: TAIR
  • membrane Source: TAIR
  • ribosome Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 4141ChloroplastBy similarityAdd
BLAST
Chaini42 – 22318250S ribosomal protein L6, chloroplasticPRO_0000249858Add
BLAST

Proteomic databases

PaxDbiO23049.
PRIDEiO23049.

PTM databases

iPTMnetiO23049.

Expressioni

Gene expression databases

GenevisibleiO23049. AT.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.By similarity

Protein-protein interaction databases

BioGridi24508. 5 interactions.
IntActiO23049. 1 interaction.
STRINGi3702.AT1G05190.1.

Structurei

3D structure databases

ProteinModelPortaliO23049.
SMRiO23049. Positions 47-218.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO23049.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L6P family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiKOG3254. Eukaryota.
COG0097. LUCA.
HOGENOMiHOG000039903.
InParanoidiO23049.
KOiK02933.
OMAiLIANMVE.
OrthoDBiEOG09360LEH.
PhylomeDBiO23049.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
HAMAPiMF_01365_B. Ribosomal_L6_B. 1 hit.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
IPR002358. Ribosomal_L6_CS.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PRINTSiPR00059. RIBOSOMALL6.
SUPFAMiSSF56053. SSF56053. 2 hits.
TIGRFAMsiTIGR03654. L6_bact. 1 hit.
PROSITEiPS00525. RIBOSOMAL_L6_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O23049-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP
60 70 80 90 100
IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
110 120 130 140 150
TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL
160 170 180 190 200
GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
210 220
KGKGVKYSDE IVRRKEGKAG KKK
Length:223
Mass (Da):24,706
Last modified:January 1, 1998 - v1
Checksum:iC5F8176ED59F84B3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC000098 Genomic DNA. Translation: AAB71459.1.
CP002684 Genomic DNA. Translation: AEE27802.1.
AY040077 mRNA. Translation: AAK64135.1.
AF360265 mRNA. Translation: AAK25975.1.
AY085715 mRNA. Translation: AAM62933.1.
PIRiC86186.
RefSeqiNP_172011.1. NM_100397.2.
UniGeneiAt.24632.
At.68070.

Genome annotation databases

EnsemblPlantsiAT1G05190.1; AT1G05190.1; AT1G05190.
GeneIDi839273.
GrameneiAT1G05190.1; AT1G05190.1; AT1G05190.
KEGGiath:AT1G05190.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC000098 Genomic DNA. Translation: AAB71459.1.
CP002684 Genomic DNA. Translation: AEE27802.1.
AY040077 mRNA. Translation: AAK64135.1.
AF360265 mRNA. Translation: AAK25975.1.
AY085715 mRNA. Translation: AAM62933.1.
PIRiC86186.
RefSeqiNP_172011.1. NM_100397.2.
UniGeneiAt.24632.
At.68070.

3D structure databases

ProteinModelPortaliO23049.
SMRiO23049. Positions 47-218.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi24508. 5 interactions.
IntActiO23049. 1 interaction.
STRINGi3702.AT1G05190.1.

PTM databases

iPTMnetiO23049.

Proteomic databases

PaxDbiO23049.
PRIDEiO23049.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G05190.1; AT1G05190.1; AT1G05190.
GeneIDi839273.
GrameneiAT1G05190.1; AT1G05190.1; AT1G05190.
KEGGiath:AT1G05190.

Organism-specific databases

TAIRiAT1G05190.

Phylogenomic databases

eggNOGiKOG3254. Eukaryota.
COG0097. LUCA.
HOGENOMiHOG000039903.
InParanoidiO23049.
KOiK02933.
OMAiLIANMVE.
OrthoDBiEOG09360LEH.
PhylomeDBiO23049.

Miscellaneous databases

EvolutionaryTraceiO23049.
PROiO23049.

Gene expression databases

GenevisibleiO23049. AT.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
HAMAPiMF_01365_B. Ribosomal_L6_B. 1 hit.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
IPR002358. Ribosomal_L6_CS.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PRINTSiPR00059. RIBOSOMALL6.
SUPFAMiSSF56053. SSF56053. 2 hits.
TIGRFAMsiTIGR03654. L6_bact. 1 hit.
PROSITEiPS00525. RIBOSOMAL_L6_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRK6_ARATH
AccessioniPrimary (citable) accession number: O23049
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 19, 2006
Last sequence update: January 1, 1998
Last modified: September 7, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.