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Protein

50S ribosomal protein L6, chloroplastic

Gene

RPL6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

This protein binds directly to 23S ribosomal RNA and is located at the aminoacyl-tRNA binding site of the peptidyltransferase center.By similarity

GO - Molecular functioni

  • RNA binding Source: GO_Central
  • rRNA binding Source: UniProtKB-KW
  • structural constituent of ribosome Source: TAIR

GO - Biological processi

  • embryo development ending in seed dormancy Source: TAIR
  • response to cytokinin Source: TAIR
  • translation Source: InterPro

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6, chloroplastic
Alternative name(s):
Protein EMBRYO DEFECTIVE 2394
Gene namesi
Name:RPL6
Synonyms:EMB2394
Ordered Locus Names:At1g05190
ORF Names:YUP8H12.20
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G05190
TAIRilocus:2207190 AT1G05190

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 41ChloroplastBy similarityAdd BLAST41
ChainiPRO_000024985842 – 22350S ribosomal protein L6, chloroplasticAdd BLAST182

Proteomic databases

PaxDbiO23049
PRIDEiO23049

PTM databases

iPTMnetiO23049

Expressioni

Gene expression databases

ExpressionAtlasiO23049 baseline and differential
GenevisibleiO23049 AT

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.By similarity

Protein-protein interaction databases

BioGridi24508, 5 interactors
IntActiO23049, 1 interactor
STRINGi3702.AT1G05190.1

Structurei

3D structure databases

ProteinModelPortaliO23049
SMRiO23049
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO23049

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiKOG3254 Eukaryota
COG0097 LUCA
HOGENOMiHOG000039903
InParanoidiO23049
KOiK02933
OMAiINNMVVG
OrthoDBiEOG09360LEH
PhylomeDBiO23049

Family and domain databases

Gene3Di3.90.930.12, 2 hits
HAMAPiMF_01365_B Ribosomal_L6_B, 1 hit
InterProiView protein in InterPro
IPR000702 Ribosomal_L6
IPR020040 Ribosomal_L6_a/b-dom
IPR036789 Ribosomal_L6_a/b-dom_sf
IPR019906 Ribosomal_L6_bac-type
IPR002358 Ribosomal_L6_CS
PANTHERiPTHR11655 PTHR11655, 1 hit
PTHR11655:SF14 PTHR11655:SF14, 1 hit
PfamiView protein in Pfam
PF00347 Ribosomal_L6, 2 hits
PIRSFiPIRSF002162 Ribosomal_L6, 1 hit
PRINTSiPR00059 RIBOSOMALL6
SUPFAMiSSF56053 SSF56053, 2 hits
TIGRFAMsiTIGR03654 L6_bact, 1 hit
PROSITEiView protein in PROSITE
PS00525 RIBOSOMAL_L6_1, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O23049-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP
60 70 80 90 100
IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
110 120 130 140 150
TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL
160 170 180 190 200
GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
210 220
KGKGVKYSDE IVRRKEGKAG KKK
Length:223
Mass (Da):24,706
Last modified:January 1, 1998 - v1
Checksum:iC5F8176ED59F84B3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC000098 Genomic DNA Translation: AAB71459.1
CP002684 Genomic DNA Translation: AEE27802.1
AY040077 mRNA Translation: AAK64135.1
AF360265 mRNA Translation: AAK25975.1
AY085715 mRNA Translation: AAM62933.1
PIRiC86186
RefSeqiNP_172011.1, NM_100397.3
UniGeneiAt.24632
At.68070

Genome annotation databases

EnsemblPlantsiAT1G05190.1; AT1G05190.1; AT1G05190
GeneIDi839273
GrameneiAT1G05190.1; AT1G05190.1; AT1G05190
KEGGiath:AT1G05190

Similar proteinsi

Entry informationi

Entry nameiRK6_ARATH
AccessioniPrimary (citable) accession number: O23049
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 19, 2006
Last sequence update: January 1, 1998
Last modified: April 25, 2018
This is version 117 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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