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O22833

- LRK54_ARATH

UniProt

O22833 - LRK54_ARATH

Protein

L-type lectin-domain containing receptor kinase V.4

Gene

LECRK54

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 108 (01 Oct 2014)
      Sequence version 1 (01 Jan 1998)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + a protein = ADP + a phosphoprotein.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei363 – 3631ATPPROSITE-ProRule annotation
    Active sitei460 – 4601Proton acceptorPROSITE-ProRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi340 – 3489ATPPROSITE-ProRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. carbohydrate binding Source: InterPro
    3. protein serine/threonine kinase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    Kinase, Receptor, Serine/threonine-protein kinase, Transferase

    Keywords - Ligandi

    ATP-binding, Lectin, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciARA:AT2G43700-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    L-type lectin-domain containing receptor kinase V.4 (EC:2.7.11.1)
    Short name:
    Arabidopsis thaliana lectin-receptor kinase c1
    Short name:
    AthlecRK-c1
    Short name:
    LecRK-V.4
    Gene namesi
    Name:LECRK54
    Synonyms:LECRKC1
    Ordered Locus Names:At2g43700
    ORF Names:F18O19.19
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 2

    Organism-specific databases

    TAIRiAT2G43700.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. plasma membrane Source: UniProtKB

    Keywords - Cellular componenti

    Cell membrane, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2525Sequence AnalysisAdd
    BLAST
    Chaini26 – 658633L-type lectin-domain containing receptor kinase V.4PRO_0000403092Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi66 – 661N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi196 – 1961N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Proteomic databases

    PaxDbiO22833.
    PRIDEiO22833.

    Expressioni

    Gene expression databases

    GenevestigatoriO22833.

    Interactioni

    Protein-protein interaction databases

    STRINGi3702.AT2G43700.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliO22833.
    SMRiO22833. Positions 46-247, 267-608.
    ModBaseiSearch...
    MobiDBiSearch...

    Topological domain

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Topological domaini26 – 280255ExtracellularSequence AnalysisAdd
    BLAST
    Topological domaini302 – 658357CytoplasmicSequence AnalysisAdd
    BLAST

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei281 – 30121HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini334 – 592259Protein kinasePROSITE-ProRule annotationAdd
    BLAST

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni26 – 248223Legume-lectin likeAdd
    BLAST

    Sequence similaritiesi

    In the C-terminal section; belongs to the protein kinase superfamily. Ser/Thr protein kinase family.Curated
    In the N-terminal section; belongs to the leguminous lectin family.Curated
    Contains 1 protein kinase domain.PROSITE-ProRule annotation

    Keywords - Domaini

    Signal, Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiCOG0515.
    HOGENOMiHOG000116555.
    InParanoidiO22833.
    OMAiNSANDTV.
    PhylomeDBiO22833.

    Family and domain databases

    Gene3Di2.60.120.200. 1 hit.
    InterProiIPR008985. ConA-like_lec_gl_sf.
    IPR013320. ConA-like_subgrp.
    IPR011009. Kinase-like_dom.
    IPR001220. Legume_lectin_dom.
    IPR000719. Prot_kinase_dom.
    IPR017441. Protein_kinase_ATP_BS.
    IPR008271. Ser/Thr_kinase_AS.
    [Graphical view]
    PfamiPF00139. Lectin_legB. 1 hit.
    PF00069. Pkinase. 1 hit.
    [Graphical view]
    SUPFAMiSSF49899. SSF49899. 1 hit.
    SSF56112. SSF56112. 1 hit.
    PROSITEiPS00107. PROTEIN_KINASE_ATP. 1 hit.
    PS50011. PROTEIN_KINASE_DOM. 1 hit.
    PS00108. PROTEIN_KINASE_ST. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    O22833-1 [UniParc]FASTAAdd to Basket

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    MSRTIGSRVI FLILALFCCT ENSRGKLVMQ GSAGFFKGYR TLTSTKKHAY    50
    GQAFEDEIVP FKNSANDTVT SFSVTFFFAI APEDKHKGAH GMAFVISPTR 100
    GITGASADQY LGIFNKANNG DSSNHVIAVE LDINKDEEFG DINDNHVGIN 150
    INGMRSIKFA PAGYYDQEGQ FKDLSLISGS LLRVTILYSQ MEKQLNVTLS 200
    SPEEAYYPNK PLLSLNQDLS PYILENMYVG FSASTGSVRA MHYMLSWFVH 250
    GGVDVPNLDL GIPTFPPYPK EKSLVYRIVL VTSLALVLFV ALVASALSIF 300
    FYRRHKKVKE VLEEWEIQCG PHRFAYKELF KATKGFKQLL GKGGFGQVFK 350
    GTLPGSDAEI AVKRISHDSK QGMQEFLAEI STIGRLRHQN LVRLQGYCRY 400
    KEELYLVYDF MPNGSLDKYL YHRANQEQLT WNQRFKIIKD IASALCYLHH 450
    EWVQVVIHRD IKPANVLIDH QMNARLGDFG LAKLYDQGYD PQTSRVAGTF 500
    WYIAPELIRS GRATTGTDVY AFGLFMLEVS CGRRLIERRT ASDEVVLAEW 550
    TLKCWENGDI LEAVNDGIRH EDNREQLELV LKLGVLCSHQ AVAIRPDMSK 600
    VVQILGGDLQ LPDNLLDIVK AEKVRMWSET SESVLGVLTS QGSIGTLTLT 650
    EPFTSRGR 658
    Length:658
    Mass (Da):73,906
    Last modified:January 1, 1998 - v1
    Checksum:i66E871108F732BB1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC002333 Genomic DNA. Translation: AAB64036.1.
    CP002685 Genomic DNA. Translation: AEC10309.1.
    AY074631 mRNA. Translation: AAL69447.1.
    PIRiD84869.
    RefSeqiNP_181898.1. NM_129932.6.
    UniGeneiAt.37031.

    Genome annotation databases

    EnsemblPlantsiAT2G43700.1; AT2G43700.1; AT2G43700.
    GeneIDi818972.
    KEGGiath:AT2G43700.

    Cross-referencesi

    Web resourcesi

    PlantP kinase Classification PPC

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC002333 Genomic DNA. Translation: AAB64036.1 .
    CP002685 Genomic DNA. Translation: AEC10309.1 .
    AY074631 mRNA. Translation: AAL69447.1 .
    PIRi D84869.
    RefSeqi NP_181898.1. NM_129932.6.
    UniGenei At.37031.

    3D structure databases

    ProteinModelPortali O22833.
    SMRi O22833. Positions 46-247, 267-608.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.AT2G43700.1-P.

    Proteomic databases

    PaxDbi O22833.
    PRIDEi O22833.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT2G43700.1 ; AT2G43700.1 ; AT2G43700 .
    GeneIDi 818972.
    KEGGi ath:AT2G43700.

    Organism-specific databases

    GeneFarmi 92. 4.
    TAIRi AT2G43700.

    Phylogenomic databases

    eggNOGi COG0515.
    HOGENOMi HOG000116555.
    InParanoidi O22833.
    OMAi NSANDTV.
    PhylomeDBi O22833.

    Enzyme and pathway databases

    BioCyci ARA:AT2G43700-MONOMER.

    Gene expression databases

    Genevestigatori O22833.

    Family and domain databases

    Gene3Di 2.60.120.200. 1 hit.
    InterProi IPR008985. ConA-like_lec_gl_sf.
    IPR013320. ConA-like_subgrp.
    IPR011009. Kinase-like_dom.
    IPR001220. Legume_lectin_dom.
    IPR000719. Prot_kinase_dom.
    IPR017441. Protein_kinase_ATP_BS.
    IPR008271. Ser/Thr_kinase_AS.
    [Graphical view ]
    Pfami PF00139. Lectin_legB. 1 hit.
    PF00069. Pkinase. 1 hit.
    [Graphical view ]
    SUPFAMi SSF49899. SSF49899. 1 hit.
    SSF56112. SSF56112. 1 hit.
    PROSITEi PS00107. PROTEIN_KINASE_ATP. 1 hit.
    PS50011. PROTEIN_KINASE_DOM. 1 hit.
    PS00108. PROTEIN_KINASE_ST. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    4. "Characterization of the Arabidopsis lecRK-a genes: members of a superfamily encoding putative receptors with an extracellular domain homologous to legume lectins."
      Herve C., Serres J., Dabos P., Canut H., Barre A., Rouge P., Lescure B.
      Plant Mol. Biol. 39:671-682(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY.
    5. Cited for: GENE FAMILY.
    6. "Arabidopsis L-type lectin receptor kinases: phylogeny, classification, and expression profiles."
      Bouwmeester K., Govers F.
      J. Exp. Bot. 60:4383-4396(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiLRK54_ARATH
    AccessioniPrimary (citable) accession number: O22833
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 11, 2011
    Last sequence update: January 1, 1998
    Last modified: October 1, 2014
    This is version 108 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3