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Protein
Submitted name:

At2g43770

Gene

At2g43770

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Enzyme and pathway databases

ReactomeiR-ATH-72163 mRNA Splicing - Major Pathway
R-ATH-72165 mRNA Splicing - Minor Pathway

Names & Taxonomyi

Protein namesi
Submitted name:
At2g43770Imported
Submitted name:
Putative splicing factorImported
Submitted name:
Transducin/WD40 repeat-like superfamily proteinImported
Gene namesi
Ordered Locus Names:At2g43770Imported
ORF Names:F18O19.12Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G43770
TAIRilocus:2043929 AT2G43770

Subcellular locationi

Expressioni

Gene expression databases

ExpressionAtlasiO22826 baseline and differential

Interactioni

Protein-protein interaction databases

IntActiO22826, 1 interactor
STRINGi3702.AT2G43770.1

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini49 – 343WD_REPEATS_REGIONInterPro annotationAdd BLAST295
Repeati49 – 82WDPROSITE-ProRule annotationAdd BLAST34
Repeati92 – 133WDPROSITE-ProRule annotationAdd BLAST42
Repeati134 – 176WDPROSITE-ProRule annotationAdd BLAST43
Repeati183 – 217WDPROSITE-ProRule annotationAdd BLAST35
Repeati218 – 252WDPROSITE-ProRule annotationAdd BLAST35
Repeati279 – 309WDPROSITE-ProRule annotationAdd BLAST31
Repeati310 – 343WDPROSITE-ProRule annotationAdd BLAST34

Keywords - Domaini

RepeatSAAS annotation, WD repeatPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG0265 Eukaryota
ENOG410XSEW LUCA
HOGENOMiHOG000091644
KOiK12857
OMAiGDCENYG
OrthoDBiEOG09360DZZ

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR024977 Apc4_WD40_dom
IPR020472 G-protein_beta_WD-40_rep
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF12894 ANAPC4_WD40, 1 hit
PF00400 WD40, 4 hits
PRINTSiPR00320 GPROTEINBRPT
SMARTiView protein in SMART
SM00320 WD40, 7 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS00678 WD_REPEATS_1, 4 hits
PS50082 WD_REPEATS_2, 7 hits
PS50294 WD_REPEATS_REGION, 1 hit

Sequencei

Sequence statusi: Complete.

O22826-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS
60 70 80 90 100
GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
110 120 130 140 150
DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG
160 170 180 190 200
PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
210 220 230 240 250
DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD
260 270 280 290 300
MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
310 320 330 340
TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI
Length:343
Mass (Da):37,886
Last modified:January 1, 1998 - v1
Checksum:i80E096378E5E4CF7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002333 Genomic DNA Translation: AAB64029.1
AY093182 mRNA Translation: AAM13181.1
BT008828 mRNA Translation: AAP68267.1
CP002685 Genomic DNA Translation: AEC10322.1
PIRiC84870
RefSeqiNP_181905.1, NM_129939.6
UniGeneiAt.66405

Genome annotation databases

EnsemblPlantsiAT2G43770.1; AT2G43770.1; AT2G43770
GeneIDi818980
GrameneiAT2G43770.1; AT2G43770.1; AT2G43770
KEGGiath:AT2G43770

Similar proteinsi

Entry informationi

Entry nameiO22826_ARATH
AccessioniPrimary (citable) accession number: O22826
Entry historyiIntegrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: May 23, 2018
This is version 150 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health