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Protein
Submitted name:

Putative MuDR-A-like transposon protein

Gene

T3F12.12

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative MuDR-A-like transposon proteinImported
Gene namesi
Name:T3F12.12Imported
Ordered Locus Names:At4g08680Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini545 – 58642SWIM-typeInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili705 – 73228Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

InterProiIPR018289. MULE_transposase_dom.
IPR004332. Transposase_MuDR.
IPR006564. Znf_PMZ.
IPR007527. Znf_SWIM.
[Graphical view]
PfamiPF03108. DBD_Tnp_Mut. 1 hit.
PF10551. MULE. 1 hit.
PF04434. SWIM. 1 hit.
[Graphical view]
SMARTiSM00575. ZnF_PMZ. 1 hit.
[Graphical view]
PROSITEiPS50966. ZF_SWIM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O22271-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFDDDVDMFY KYSDGDVEYN GGNESESEER IEEEIVRSKK NTKKNKKEKK
60 70 80 90 100
KKDEEDPLER FDFEVDDGVA NFEDEIPIGR DIIPESSDED EDPILVRDRR
110 120 130 140 150
IRRAMGDKFV IGSTFFTGIE FKEAILEVTL KHGHNVVQDR WEKEKISFKC
160 170 180 190 200
GMGGKCKWRV YCSYDPDRQL FVVKTSCTWH SCSPNGKCQI LKSPVIARLF
210 220 230 240 250
LDKLRLNEKF MPMDIQEYIK ERWKMVSTIP QCQRGRLLAL KMLKKEYEEQ
260 270 280 290 300
FAHIRGYVEE IHSQNPGSVA FIDTYRNEKG EDVFNRFYVC FNILRTQWAG
310 320 330 340 350
SCRPIIGLDG TFLKVVVKGV LLTAVGHDPN NQIYPIAWAV VQSENAENWL
360 370 380 390 400
WFVQQIKKDL NLEDGSRFVI LSDRSKGLLS AVKQELPNAE HRMCVKHIVE
410 420 430 440 450
NLKKNHAKKD MLKTLVWKLA WSYNEKEYGK NLNNLRCYDE ALYNDVLNEE
460 470 480 490 500
PHTWSRCFYK LGSCCEDVDN NATESFNSTI TKARAKSLIP MLETIRRQGM
510 520 530 540 550
TRIVKRNKKS LRHEGRFTKY ALKMLALEKT DADRSKVYRC THGVFEVYID
560 570 580 590 600
ENGHRVDIPK TQCSCGKWQI SGIPCEHSYG AMIEAGLDAE NYISEFFSTD
610 620 630 640 650
LWRDSYETAT MPLRGPKYWL NSSYGLVTAP PEPILPGRKK EKSKKEKFAR
660 670 680 690 700
IKGKNESPKK KKRKKNEVEK LGKKGKIIHC KSCGEAGHNA LRCKKFPKEK
710 720 730 740 750
VPRKRKSKND GNDEIEKKAK KAKNDKKDTN EKDSKKEKKS KKETHMPDTI
760
FITQPSQATQ E
Length:761
Mass (Da):88,371
Last modified:January 1, 1998 - v1
Checksum:i154F794C64B02734
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002983 Genomic DNA. Translation: AAB81881.1.
AL161512 Genomic DNA. Translation: CAB77993.1.
PIRiT00940.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002983 Genomic DNA. Translation: AAB81881.1.
AL161512 Genomic DNA. Translation: CAB77993.1.
PIRiT00940.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR018289. MULE_transposase_dom.
IPR004332. Transposase_MuDR.
IPR006564. Znf_PMZ.
IPR007527. Znf_SWIM.
[Graphical view]
PfamiPF03108. DBD_Tnp_Mut. 1 hit.
PF10551. MULE. 1 hit.
PF04434. SWIM. 1 hit.
[Graphical view]
SMARTiSM00575. ZnF_PMZ. 1 hit.
[Graphical view]
PROSITEiPS50966. ZF_SWIM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Arabidopsis thaliana BAC T3F12 from chromosome IV."
    Gnoj L., Huang E.N., Habermann K., Hameed A., Hasegawa A., Jensen K., Schutz K., Shohdy N., Kaplan N., de la Bastide M., Johnson A.F., Dedhia N., Lodhi M., Parnell L.D., Martienssen R., McCombie W.R.
    Submitted (SEP-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. Parnell L.D., McCombie W.R.
    Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. EU Arabidopsis sequencing project
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiO22271_ARATH
AccessioniPrimary (citable) accession number: O22271
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: July 6, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.