Unreviewed,
UniProtKB/TrEMBL O22179 (O22179_ARATH)
Last modified
June 16, 2009.
Version 70.
History...
Clusters with 100%,
90%,
50% identity |
Third-party data |
Customize display | text xml rdf/xml gff fasta |
Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information
Names and origin
| Protein names | Submitted name: At2g23280 EMBL AAP37702.1 Submitted name: MYB family transcription factor EMBL AAB87103.1 MYB transcription factor EMBL AAS10044.1 Putative MYB family transcription factor EMBL BAC41938.1 | ||
| Gene names |
| ||
| Organism | Arabidopsis thaliana (Mouse-ear cress) [Complete proteome] | ||
| Taxonomic identifier | 3702 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis |
Protein attributes
| Sequence length | 309 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at transcript level. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Nucleus Spearmint SPM001005 |
| Domain | Repeat Spearmint SPM001005 |
| Ligand | DNA-binding Spearmint SPM001005 |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | regulation of transcription Inferred from electronic annotation. Source: InterPro response to cadmium ionInferred from expression pattern. Source: TAIR response to salt stressInferred from expression pattern. Source: TAIR |
| Cellular component | nucleus Inferred from electronic annotation. Source: UniProtKB-KW |
| Molecular function | DNA binding Inferred from electronic annotation. Source: InterPro protein bindingInferred from physical interaction. Source: IntAct |
| Complete GO annotation... | |
Sequences
| ||||||||||||||||||
References
| [1] | Rounsley S.D., Lin X., Ketchum K.A., Crosby M.L., Brandon R.C., Sykes S.M., Kaul S., Mason T.M., Kerlavage A.R., Adams M.D., Somerville C.R., Venter J.C. Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. |
| [2] | Town C.D., Kaul S. Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. |
| [3] | "The MYB Transcription Factor Family in Arabidopsis: A Genome-Wide Cloning and Expression Pattern Analysis." Qu L., Gu H. Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. |
| [4] | "Arabidopsis ORF clones." Kim C.J., Chen H., Cheuk R., Shinn P., Bowser L., Carninci P., Dale J.M., Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lin J., Miranda M., Narusaka M. Ecker J.R.Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. |
| [5] | "Arabidopsis thaliana full-length cDNA." Seki M., Iida K., Satou M., Sakurai T., Akiyama K., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K. Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. |
Cross-references
Sequence databases | |
|---|---|
| AC002391 Genomic DNA. Translation: AAB87103.1. BT008343 mRNA. Translation: AAP37702.1. AY519574 mRNA. Translation: AAS10044.1. AK117263 mRNA. Translation: BAC41938.1. | |
| IPI | IPI00528438. |
| PIR | T00503. |
| RefSeq | NP_179910.1. |
| UniGene | At.28681 |
3D structure databases | |
| HSSP | HSSP built from PDB template 1MBK based on UniProtKB P06876. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | O22179. 8 interactions. |
Genome annotation databases | |
| GeneID | 816861. |
| GenomeReviews | Gene locus AT2G23290 in contig CT485783_GR. |
| KEGG | ath:AT2G23290. |
| NMPDR | fig|3702.1.peg.28949. |
Organism-specific databases | |
| TAIR | At2g23290. |
Phylogenomic databases | |
| OMA | O22179. ILAHARF. |
Gene expression databases | |
| ArrayExpress | O22179. |
Family and domain databases | |
| InterPro | IPR012287. Homeodomain-rel. IPR017930. Myb-type_HTH. IPR014778. Myb_DNA-bd. IPR015495. Myb_trans_fac. IPR001005. SANT_DNA-bd. [Graphical view] |
| Gene3D | G3DSA:1.10.10.60. Homeodomain-rel. 2 hits. |
| PANTHER | PTHR10641. Myb_transfac. 1 hit. |
| Pfam | PF00249. Myb_DNA-binding. 2 hits. [Graphical view] |
| SMART | SM00717. SANT. 2 hits. [Graphical view] |
| PROSITE | PS51294. HTH_MYB. 2 hits. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | O22179_ARATH | ||||||||
| Accession | Primary (citable) accession number: O22179 | ||||||||
| Entry history |
| ||||||||
| Entry status | Unreviewed (UniProtKB/TrEMBL) | ||||||||

Clusters with


