O22179 (O22179_ARATH) Unreviewed, UniProtKB/TrEMBL
Last modified
January 25, 2012.
Version 98.
History...
Names and origin
| Protein names | Submitted name: At2g23280 EMBL AAP37702.1 Submitted name: MYB family transcription factor EMBL AAB87103.1 Submitted name: MYB transcription factor EMBL AAS10044.1 Submitted name: Myb domain protein 70 EMBL AEC07437.1 Submitted name: Putative MYB family transcription factor EMBL BAC41938.1 | ||||||
| Gene names |
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| Organism | Arabidopsis thaliana (Mouse-ear cress) EMBL AAB87103.1 | ||||||
| Taxonomic identifier | 3702 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Protein attributes
| Sequence length | 309 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at transcript level |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Nucleus SAAS SAAS015495 |
| Domain | Repeat SAAS SAAS015495 |
| Ligand | DNA-binding SAAS SAAS015495 |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro |
| Cellular component | nucleus Inferred from electronic annotation. Source: UniProtKB-KW |
| Molecular function | DNA binding Inferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana." Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A. Venter J.C.Nature 402:761-768(1999) [PubMed: 10617197] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia. |
| [2] | "Arabidopsis thaliana full-length cDNA." Seki M., Iida K., Satou M., Sakurai T., Akiyama K., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K. Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. |
| [3] | "The MYB Transcription Factor Family in Arabidopsis: A Genome-Wide Cloning and Expression Pattern Analysis." Qu L., Gu H. Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. |
| [4] | TAIR Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. |
| [5] | The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia. |
| [6] | Town C.D., Kaul S. Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. |
| [7] | Rounsley S.D., Lin X., Ketchum K.A., Crosby M.L., Brandon R.C., Sykes S.M., Kaul S., Mason T.M., Kerlavage A.R., Adams M.D., Somerville C.R., Venter J.C. Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. |
| [8] | "Arabidopsis ORF clones." Kim C.J., Chen H., Cheuk R., Shinn P., Bowser L., Carninci P., Dale J.M., Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lin J., Miranda M., Narusaka M. Ecker J.R.Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AC002391 Genomic DNA. Translation: AAB87103.1. BT008343 mRNA. Translation: AAP37702.1. AY519574 mRNA. Translation: AAS10044.1. CP002685 Genomic DNA. Translation: AEC07437.1. AK117263 mRNA. Translation: BAC41938.1. |
| IPI | IPI00528438. |
| PIR | T00503. |
| RefSeq | NP_179910.1. NM_127893.2. |
| UniGene | At.28681. |
3D structure databases | |
| HSSP | HSSP built from PDB template 1MBK based on UniProtKB P06876. |
| ProteinModelPortal | O22179. |
| SMR | O22179. Positions 12-113. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | O22179. 36 interactions. |
Proteomic databases | |
| PRIDE | O22179. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblPlants | AT2G23290.1; AT2G23290.1; AT2G23290. |
| GeneID | 816861. |
| GenomeReviews | Gene locus AT2G23290 in contig CT485783_GR. |
| KEGG | ath:AT2G23290. |
| NMPDR | fig|3702.1.peg.28949. |
Organism-specific databases | |
| TAIR | At2g23290. |
Phylogenomic databases | |
| eggNOG | KOG0048. |
| HOGENOM | HBG746650. |
| InParanoid | O22179. |
| OMA | ILAHARF. |
| PhylomeDB | O22179. |
| ProtClustDB | CLSN2683882. |
Gene expression databases | |
| ArrayExpress | O22179. |
| Genevestigator | O22179. |
Family and domain databases | |
| InterPro | IPR009057. Homeodomain-like. IPR012287. Homeodomain-rel. IPR014778. Myb_DNA-bd. IPR015495. Myb_trans_fac. IPR001005. SANT_DNA-bd. IPR017930. Tscrpt_reg_HTH_Myb-type. [Graphical view] |
| Gene3D | G3DSA:1.10.10.60. Homeodomain-rel. 2 hits. |
| KO | K09422. |
| PANTHER | PTHR10641. Myb_transfac. 1 hit. |
| Pfam | PF00249. Myb_DNA-binding. 2 hits. [Graphical view] |
| SMART | SM00717. SANT. 2 hits. [Graphical view] |
| SUPFAM | SSF46689. Homeodomain_like. 1 hit. |
| PROSITE | PS51294. HTH_MYB. 2 hits. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | O22179_ARATH | ||||||||
| Accession | Primary (citable) accession number: O22179 | ||||||||
| Entry history |
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| Entry status | Unreviewed (UniProtKB/TrEMBL) | ||||||||

Clusters with
