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Protein

Ethylene-responsive transcription factor ERF008

Gene

ERF008

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi27 – 8458AP2/ERFPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Ethylene signaling pathway, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor ERF008
Gene namesi
Name:ERF008
Ordered Locus Names:At2g23340
ORF Names:T20D16.3
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G23340.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 176176Ethylene-responsive transcription factor ERF008PRO_0000290371Add
BLAST

Proteomic databases

PaxDbiO22174.
PRIDEiO22174.

Expressioni

Gene expression databases

GenevisibleiO22174. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G23340.1.

Structurei

3D structure databases

ProteinModelPortaliO22174.
SMRiO22174. Positions 26-84.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 AP2/ERF DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410JD8P. Eukaryota.
ENOG41116MV. LUCA.
HOGENOMiHOG000237624.
InParanoidiO22174.
OMAiTMGIGTR.
PhylomeDBiO22174.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O22174-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
METEAAVTAT VTAATMGIGT RKRDLKPYKG IRMRKWGKWV AEIREPNKRS
60 70 80 90 100
RIWLGSYATP EAAARAYDTA VFYLRGPSAR LNFPELLAGL TVSNGGGRGG
110 120 130 140 150
DLSAAYIRRK AAEVGAQVDA LGATVVVNTG GENRGDYEKI ENCRKSGNGS
160 170
LERVDLNKLP DPENSDGDDD ECVKRR
Length:176
Mass (Da):19,120
Last modified:January 1, 1998 - v1
Checksum:i6F8287D1F1555957
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002391 Genomic DNA. Translation: AAB87098.1.
CP002685 Genomic DNA. Translation: AEC07444.1.
AK118495 mRNA. Translation: BAC43099.1.
BT003741 mRNA. Translation: AAO39969.1.
PIRiT00498.
RefSeqiNP_179915.1. NM_127898.4.
UniGeneiAt.43320.

Genome annotation databases

EnsemblPlantsiAT2G23340.1; AT2G23340.1; AT2G23340.
GeneIDi816866.
GrameneiAT2G23340.1; AT2G23340.1; AT2G23340.
KEGGiath:AT2G23340.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002391 Genomic DNA. Translation: AAB87098.1.
CP002685 Genomic DNA. Translation: AEC07444.1.
AK118495 mRNA. Translation: BAC43099.1.
BT003741 mRNA. Translation: AAO39969.1.
PIRiT00498.
RefSeqiNP_179915.1. NM_127898.4.
UniGeneiAt.43320.

3D structure databases

ProteinModelPortaliO22174.
SMRiO22174. Positions 26-84.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G23340.1.

Proteomic databases

PaxDbiO22174.
PRIDEiO22174.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G23340.1; AT2G23340.1; AT2G23340.
GeneIDi816866.
GrameneiAT2G23340.1; AT2G23340.1; AT2G23340.
KEGGiath:AT2G23340.

Organism-specific databases

TAIRiAT2G23340.

Phylogenomic databases

eggNOGiENOG410JD8P. Eukaryota.
ENOG41116MV. LUCA.
HOGENOMiHOG000237624.
InParanoidiO22174.
OMAiTMGIGTR.
PhylomeDBiO22174.

Miscellaneous databases

PROiO22174.

Gene expression databases

GenevisibleiO22174. AT.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Genome-wide analysis of the ERF gene family in Arabidopsis and rice."
    Nakano T., Suzuki K., Fujimura T., Shinshi H.
    Plant Physiol. 140:411-432(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiERF08_ARATH
AccessioniPrimary (citable) accession number: O22174
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: January 1, 1998
Last modified: February 17, 2016
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.