Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Probable ribosome biogenesis protein RLP24

Gene

At2g44860

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of NOG1 to pre-60S particles.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Ribosome biogenesis

Names & Taxonomyi

Protein namesi
Recommended name:
Probable ribosome biogenesis protein RLP24
Gene namesi
Ordered Locus Names:At2g44860
ORF Names:T13E15.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G44860.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: TAIR
  • nucleolus Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 159159Probable ribosome biogenesis protein RLP24PRO_0000136903Add
BLAST

Proteomic databases

PaxDbiO22165.
PRIDEiO22165.

Expressioni

Gene expression databases

ExpressionAtlasiO22165. baseline and differential.
GenevisibleiO22165. AT.

Interactioni

Subunit structurei

Associated with nucleolar and cytoplasmic pre-60S particles. At the end of biogenesis it dissociates from cytoplasmic pre-60S particles and is likely to be exchanged for its ribosomal homolog, RPL24 (By similarity). Interacts with REIL1 AND REIL2 (PubMed:24603461).By similarity1 Publication

Protein-protein interaction databases

STRINGi3702.AT2G44860.1.

Structurei

3D structure databases

ProteinModelPortaliO22165.
SMRiO22165. Positions 1-56.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L24e family.Curated

Phylogenomic databases

eggNOGiKOG1723. Eukaryota.
COG2075. LUCA.
HOGENOMiHOG000184344.
InParanoidiO22165.
KOiK02896.
OMAiKAPHAGK.
OrthoDBiEOG09360QPV.
PhylomeDBiO22165.

Family and domain databases

CDDicd00472. Ribosomal_L24e_L24. 1 hit.
Gene3Di2.30.170.20. 1 hit.
InterProiIPR000988. Ribosomal_L24e-rel.
IPR023442. Ribosomal_L24e_CS.
IPR024546. Ribosome_biogen_RLP24.
IPR011017. TRASH_dom.
[Graphical view]
PANTHERiPTHR10792. PTHR10792. 1 hit.
PTHR10792:SF8. PTHR10792:SF8. 1 hit.
PfamiPF01246. Ribosomal_L24e. 1 hit.
[Graphical view]
SMARTiSM00746. TRASH. 1 hit.
[Graphical view]
PROSITEiPS01073. RIBOSOMAL_L24E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O22165-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLEKCWFCS STIYPGHGIQ FVRNDAKIFR FCRSKCHKNF KMKRNPRKVK
60 70 80 90 100
WTKAFRAAHG KDMTKDTTFE FEKKRNRPER YDRNVTENTL MAIKKIAKIR
110 120 130 140 150
TAREAKHIEN RLKPNKQKKL NDDMKELDQN IHMVQAPGAQ KIKVDVSEKK

SVQNEAMEE
Length:159
Mass (Da):18,942
Last modified:January 1, 1998 - v1
Checksum:i7F3F5EF7B66D4E94
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002388 Genomic DNA. Translation: AAC31838.1.
CP002685 Genomic DNA. Translation: AEC10476.1.
CP002685 Genomic DNA. Translation: AEC10477.1.
AY049251 mRNA. Translation: AAK83593.1.
AY098951 mRNA. Translation: AAM19961.1.
AK317317 mRNA. Translation: BAH19992.1.
AY087358 mRNA. Translation: AAM64908.1.
PIRiT00407.
RefSeqiNP_001078059.1. NM_001084590.1.
NP_182013.1. NM_130050.4.
UniGeneiAt.24272.
At.69628.

Genome annotation databases

EnsemblPlantsiAT2G44860.1; AT2G44860.1; AT2G44860.
AT2G44860.2; AT2G44860.2; AT2G44860.
GeneIDi819095.
GrameneiAT2G44860.1; AT2G44860.1; AT2G44860.
AT2G44860.2; AT2G44860.2; AT2G44860.
KEGGiath:AT2G44860.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002388 Genomic DNA. Translation: AAC31838.1.
CP002685 Genomic DNA. Translation: AEC10476.1.
CP002685 Genomic DNA. Translation: AEC10477.1.
AY049251 mRNA. Translation: AAK83593.1.
AY098951 mRNA. Translation: AAM19961.1.
AK317317 mRNA. Translation: BAH19992.1.
AY087358 mRNA. Translation: AAM64908.1.
PIRiT00407.
RefSeqiNP_001078059.1. NM_001084590.1.
NP_182013.1. NM_130050.4.
UniGeneiAt.24272.
At.69628.

3D structure databases

ProteinModelPortaliO22165.
SMRiO22165. Positions 1-56.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G44860.1.

Proteomic databases

PaxDbiO22165.
PRIDEiO22165.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G44860.1; AT2G44860.1; AT2G44860.
AT2G44860.2; AT2G44860.2; AT2G44860.
GeneIDi819095.
GrameneiAT2G44860.1; AT2G44860.1; AT2G44860.
AT2G44860.2; AT2G44860.2; AT2G44860.
KEGGiath:AT2G44860.

Organism-specific databases

TAIRiAT2G44860.

Phylogenomic databases

eggNOGiKOG1723. Eukaryota.
COG2075. LUCA.
HOGENOMiHOG000184344.
InParanoidiO22165.
KOiK02896.
OMAiKAPHAGK.
OrthoDBiEOG09360QPV.
PhylomeDBiO22165.

Miscellaneous databases

PROiO22165.

Gene expression databases

ExpressionAtlasiO22165. baseline and differential.
GenevisibleiO22165. AT.

Family and domain databases

CDDicd00472. Ribosomal_L24e_L24. 1 hit.
Gene3Di2.30.170.20. 1 hit.
InterProiIPR000988. Ribosomal_L24e-rel.
IPR023442. Ribosomal_L24e_CS.
IPR024546. Ribosome_biogen_RLP24.
IPR011017. TRASH_dom.
[Graphical view]
PANTHERiPTHR10792. PTHR10792. 1 hit.
PTHR10792:SF8. PTHR10792:SF8. 1 hit.
PfamiPF01246. Ribosomal_L24e. 1 hit.
[Graphical view]
SMARTiSM00746. TRASH. 1 hit.
[Graphical view]
PROSITEiPS01073. RIBOSOMAL_L24E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRLP24_ARATH
AccessioniPrimary (citable) accession number: O22165
Secondary accession number(s): B9DGX5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 27, 2004
Last sequence update: January 1, 1998
Last modified: September 7, 2016
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.