Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Probable ribosome biogenesis protein RLP24

Gene

At2g44860

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of NOG1 to pre-60S particles.By similarity

GO - Molecular functioni

  • RNA binding Source: GO_Central
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Biological processRibosome biogenesis

Names & Taxonomyi

Protein namesi
Recommended name:
Probable ribosome biogenesis protein RLP24
Gene namesi
Ordered Locus Names:At2g44860
ORF Names:T13E15.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G44860
TAIRilocus:2054982 AT2G44860

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001369031 – 159Probable ribosome biogenesis protein RLP24Add BLAST159

Proteomic databases

PaxDbiO22165
PRIDEiO22165

Expressioni

Gene expression databases

ExpressionAtlasiO22165 baseline and differential
GenevisibleiO22165 AT

Interactioni

Subunit structurei

Associated with nucleolar and cytoplasmic pre-60S particles. At the end of biogenesis it dissociates from cytoplasmic pre-60S particles and is likely to be exchanged for its ribosomal homolog, RPL24 (By similarity). Interacts with REIL1 AND REIL2 (PubMed:24603461).By similarity1 Publication

Protein-protein interaction databases

STRINGi3702.AT2G44860.1

Structurei

3D structure databases

ProteinModelPortaliO22165
SMRiO22165
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1723 Eukaryota
COG2075 LUCA
HOGENOMiHOG000184344
InParanoidiO22165
KOiK02896
OMAiCSSRIYP
OrthoDBiEOG09360QPV
PhylomeDBiO22165

Family and domain databases

CDDicd00472 Ribosomal_L24e_L24, 1 hit
Gene3Di2.30.170.20, 1 hit
InterProiView protein in InterPro
IPR038630 L24e/L24_sf
IPR000988 Ribosomal_L24e-rel
IPR023442 Ribosomal_L24e_CS
IPR011017 TRASH_dom
PANTHERiPTHR10792 PTHR10792, 1 hit
PfamiView protein in Pfam
PF01246 Ribosomal_L24e, 1 hit
SMARTiView protein in SMART
SM00746 TRASH, 1 hit
PROSITEiView protein in PROSITE
PS01073 RIBOSOMAL_L24E, 1 hit

Sequencei

Sequence statusi: Complete.

O22165-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLEKCWFCS STIYPGHGIQ FVRNDAKIFR FCRSKCHKNF KMKRNPRKVK
60 70 80 90 100
WTKAFRAAHG KDMTKDTTFE FEKKRNRPER YDRNVTENTL MAIKKIAKIR
110 120 130 140 150
TAREAKHIEN RLKPNKQKKL NDDMKELDQN IHMVQAPGAQ KIKVDVSEKK

SVQNEAMEE
Length:159
Mass (Da):18,942
Last modified:January 1, 1998 - v1
Checksum:i7F3F5EF7B66D4E94
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002388 Genomic DNA Translation: AAC31838.1
CP002685 Genomic DNA Translation: AEC10476.1
CP002685 Genomic DNA Translation: AEC10477.1
AY049251 mRNA Translation: AAK83593.1
AY098951 mRNA Translation: AAM19961.1
AK317317 mRNA Translation: BAH19992.1
AY087358 mRNA Translation: AAM64908.1
PIRiT00407
RefSeqiNP_001078059.1, NM_001084590.1
NP_182013.1, NM_130050.4
UniGeneiAt.24272
At.69628

Genome annotation databases

EnsemblPlantsiAT2G44860.1; AT2G44860.1; AT2G44860
AT2G44860.2; AT2G44860.2; AT2G44860
GeneIDi819095
GrameneiAT2G44860.1; AT2G44860.1; AT2G44860
AT2G44860.2; AT2G44860.2; AT2G44860
KEGGiath:AT2G44860

Similar proteinsi

Entry informationi

Entry nameiRLP24_ARATH
AccessioniPrimary (citable) accession number: O22165
Secondary accession number(s): B9DGX5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 27, 2004
Last sequence update: January 1, 1998
Last modified: April 25, 2018
This is version 111 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health