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Protein

30S ribosomal protein S18, chloroplastic

Gene

rps18

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S18, chloroplastic
Gene namesi
Name:rps18
Encoded oniPlastid; Chloroplast
OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)
Taxonomic identifieri3055 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas
Proteomesi
  • UP000006906 Componenti: Chloroplast

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 13713730S ribosomal protein S18, chloroplasticPRO_0000111280Add
BLAST

Proteomic databases

PaxDbiO20032.
PRIDEiO20032.

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.

Protein-protein interaction databases

STRINGi3055.DAA00937.

Structurei

3D structure databases

ProteinModelPortaliO20032.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S18P family.Curated

Phylogenomic databases

eggNOGiKOG3162. Eukaryota.
COG0238. LUCA.
InParanoidiO20032.

Family and domain databases

Gene3Di4.10.640.10. 1 hit.
HAMAPiMF_00270. Ribosomal_S18.
InterProiIPR001648. Ribosomal_S18.
[Graphical view]
PfamiPF01084. Ribosomal_S18. 1 hit.
[Graphical view]
PRINTSiPR00974. RIBOSOMALS18.
ProDomiPD002239. Ribosomal_S18. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46911. SSF46911. 1 hit.
TIGRFAMsiTIGR00165. S18. 1 hit.

Sequencei

Sequence statusi: Complete.

O20032-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRGLKSNKPK PRIQKVSVRK FRRKVLSLSQ ILSRLRQKRN QKIEQQKRNK
60 70 80 90 100
PIKPLIPPKT LVIVLKEKPE KTLYNRRYID YKHSGLLQRY IGLGGKILPR
110 120 130
RQTRLTAKQQ RFVAKTIKTA RVMGLLPFVS KERSFFK
Length:137
Mass (Da):16,275
Last modified:January 1, 1998 - v1
Checksum:iAC09636E50AA050F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y13655 Genomic DNA. Translation: CAA74009.1.
FJ423446 Genomic DNA. Translation: ACJ50124.1.
Y16473 Genomic DNA. Translation: CAA76244.1.
BK000554 Genomic DNA. Translation: DAA00937.1.
PIRiT07992.
T07997.
RefSeqiNP_958392.1. NC_005353.1.

Genome annotation databases

EnsemblPlantsiDAA00937; DAA00937; DAA00937.
GeneIDi2717007.
GrameneiDAA00937; DAA00937; DAA00937.
KEGGicre:ChreCp036.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y13655 Genomic DNA. Translation: CAA74009.1.
FJ423446 Genomic DNA. Translation: ACJ50124.1.
Y16473 Genomic DNA. Translation: CAA76244.1.
BK000554 Genomic DNA. Translation: DAA00937.1.
PIRiT07992.
T07997.
RefSeqiNP_958392.1. NC_005353.1.

3D structure databases

ProteinModelPortaliO20032.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3055.DAA00937.

Proteomic databases

PaxDbiO20032.
PRIDEiO20032.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiDAA00937; DAA00937; DAA00937.
GeneIDi2717007.
GrameneiDAA00937; DAA00937; DAA00937.
KEGGicre:ChreCp036.

Phylogenomic databases

eggNOGiKOG3162. Eukaryota.
COG0238. LUCA.
InParanoidiO20032.

Family and domain databases

Gene3Di4.10.640.10. 1 hit.
HAMAPiMF_00270. Ribosomal_S18.
InterProiIPR001648. Ribosomal_S18.
[Graphical view]
PfamiPF01084. Ribosomal_S18. 1 hit.
[Graphical view]
PRINTSiPR00974. RIBOSOMALS18.
ProDomiPD002239. Ribosomal_S18. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46911. SSF46911. 1 hit.
TIGRFAMsiTIGR00165. S18. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The chloroplast ycf3 and ycf4 open reading frames of Chlamydomonas reinhardtii are required for the accumulation of the photosystem I complex."
    Boudreau E., Takahashi Y., Lemieux C., Turmel M., Rochaix J.-D.
    EMBO J. 16:6095-6104(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Nucleotide diversity of the Chlamydomonas reinhardtii plastid genome: addressing the mutational-hazard hypothesis."
    Smith D.R., Lee R.W.
    BMC Evol. Biol. 9:120-120(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CC-503.
  3. "Extraordinary features in the Chlamydomonas reinhardtii chloroplast genome: (1) rps2 as part of a large open reading frame; (2) a C. reinhardtii specific repeat sequence."
    Leu S.
    Biochim. Biophys. Acta 1365:541-544(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 13-137.
  4. "The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats."
    Maul J.E., Lilly J.W., Cui L., dePamphilis C.W., Miller W., Harris E.H., Stern D.B.
    Plant Cell 14:2659-2679(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION, COMPLETE PLASTID GENOME.

Entry informationi

Entry nameiRR18_CHLRE
AccessioniPrimary (citable) accession number: O20032
Secondary accession number(s): B7U1H7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 29, 2001
Last sequence update: January 1, 1998
Last modified: February 17, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.