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Protein

Probable RuBisCO transcriptional regulator

Gene

rbcR

Organism
Cyanidium caldarium (Red alga)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi23 – 4220H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable RuBisCO transcriptional regulator
Gene namesi
Name:rbcR
Synonyms:ycf30, ycf7
Encoded oniPlastid; Chloroplast
OrganismiCyanidium caldarium (Red alga)
Taxonomic identifieri2771 [NCBI]
Taxonomic lineageiEukaryotaRhodophytaBangiophyceaeCyanidialesCyanidiaceaeCyanidium

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 317317Probable RuBisCO transcriptional regulatorPRO_0000105770Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliO19892.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini6 – 6358HTH lysR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.PROSITE-ProRule annotation

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O19892-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTDLPFTLDQ LRILRAILIQ GSFKKAATSL YISQPAVSSH VHNIEKQLNI
60 70 80 90 100
QLFDRSHRNA QLTEAGQLLL KYGGRILALC EETCRALEDL QNLQCGNLII
110 120 130 140 150
GASQTTGTYL MPKLIGLFRQ KYPQISVQLQ VHSTRRISWS VANGQLDLAI
160 170 180 190 200
IGGEVPKELT EILEVRNFVE DELTLILPPS HPFSKFSCIQ KEDLYRLRFI
210 220 230 240 250
ALDKNSTIRK VIDKILNRNG IDSSRLKTEM ELSSIEAIKN AVQSGLGASF
260 270 280 290 300
VSISAIDKEL KLQLLNRVNI DKIKIKRMLS IITNYSRYRS KASETFCHEI
310
LGLLVNLPFK NAPSTEK
Length:317
Mass (Da):35,747
Last modified:January 1, 1998 - v1
Checksum:iC81489C529464FFF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF022186 Genomic DNA. Translation: AAB82697.1.
PIRiT11960.
RefSeqiNP_045064.1. NC_001840.1.

Genome annotation databases

GeneIDi800283.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF022186 Genomic DNA. Translation: AAB82697.1.
PIRiT11960.
RefSeqiNP_045064.1. NC_001840.1.

3D structure databases

ProteinModelPortaliO19892.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi800283.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The structure and gene repertoire of an ancient red algal plastid genome."
    Gloeckner G., Rosenthal A., Valentin K.-U.
    J. Mol. Evol. 51:382-390(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RK-1.

Entry informationi

Entry nameiRBCR_CYACA
AccessioniPrimary (citable) accession number: O19892
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 20, 2001
Last sequence update: January 1, 1998
Last modified: July 6, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.