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O19810 (O19810_CAPHI) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Mhc class II DRA EMBL BAA23386.1
Gene names
Name:DRA EMBL BAA23386.1
OrganismCapra hircus (Goat) EMBL BAA23386.1
Taxonomic identifier9925 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Laurasiatheria › Cetartiodactyla › Ruminantia › Pecora › Bovidae › Caprinae › Capra

Protein attributes

Sequence length253 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the MHC class II family. RuleBase RU004238

Contains 1 Ig-like C1-type (immunoglobulin-like) domain. SAAS SAAS003006

Sequences

Sequence LengthMass (Da)Tools
O19810 [UniParc].

Last modified January 1, 1998. Version 1.
Checksum: 05134E4618E14D13

FASTA25328,598
        10         20         30         40         50         60 
MAITRVPILG LFITVLISLQ ELWAIKEDHV IIQAEFYLNP EQSAEFMFDF DGDEIFHVDM 

        70         80         90        100        110        120 
QKKETVWRLP EFGRFASFEA QGALANMAVM KANLDIMIKR SNNTPNTNVP PEVTLLPNKP 

       130        140        150        160        170        180 
VELGEPNTLI CFIDKFSPPV ISVTWLRNGI PVTDGVSQTV FLPRDDHLFR KFHYLPFLPT 

       190        200        210        220        230        240 
TEDVYDCKVE HWGLNEPLLK HWEYEAPAPL PETTENAVCA LGLIVALVGI IAGTIFIIKG 

       250 
VRKANTVERR GPL

« Hide

References

[1]"Analysis of goat MHC class II DRA and DRB genes: identification of the expressed gene and new DRB alleles."
Takada T., Kikkawa Y., Yonekawa H., Amano T.
Immunogenetics 48:408-412(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AB008754 mRNA. Translation: BAA23385.1.
AB008755 Genomic DNA. Translation: BAA23386.1.

3D structure databases

ProteinModelPortalO19810.
SMRO19810. Positions 26-207.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Phylogenomic databases

HOVERGENHBG006862.

Family and domain databases

Gene3D2.60.40.10. 1 hit.
3.10.320.10. 1 hit.
InterProIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
IPR011162. MHC_I/II-like_Ag-recog.
IPR014745. MHC_II_a/b_N.
IPR001003. MHC_II_a_N.
[Graphical view]
PfamPF07654. C1-set. 1 hit.
PF00993. MHC_II_alpha. 1 hit.
[Graphical view]
SMARTSM00407. IGc1. 1 hit.
SM00920. MHC_II_alpha. 1 hit.
[Graphical view]
SUPFAMSSF54452. MHC_I/II-like_Ag-recog. 1 hit.
PROSITEPS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameO19810_CAPHI
AccessionPrimary (citable) accession number: O19810
Entry history
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: May 29, 2013
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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