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Protein

40S ribosomal protein S19

Gene

rps-19

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S19
Gene namesi
Name:rps-19
ORF Names:T05F1.3
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiT05F1.3; CE13265; WBGene00004488; rps-19.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001538231 – 14640S ribosomal protein S19Add BLAST146

Proteomic databases

EPDiO18650.
PaxDbiO18650.
PeptideAtlasiO18650.
PRIDEiO18650.

Expressioni

Gene expression databases

BgeeiWBGene00004488.

Interactioni

Protein-protein interaction databases

BioGridi38230. 2 interactors.
DIPiDIP-24437N.
MINTiMINT-1051648.
STRINGi6239.T05F1.3.2.

Structurei

3D structure databases

ProteinModelPortaliO18650.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3411. Eukaryota.
COG2238. LUCA.
GeneTreeiENSGT00390000013102.
HOGENOMiHOG000230649.
InParanoidiO18650.
KOiK02966.
OMAiYIDGPVG.
OrthoDBiEOG091G0QM7.
PhylomeDBiO18650.

Family and domain databases

InterProiView protein in InterPro
IPR001266. Ribosomal_S19e.
IPR018277. Ribosomal_S19e_CS.
IPR011991. WHTH_DNA-bd_dom.
PANTHERiPTHR11710. PTHR11710. 1 hit.
PfamiView protein in Pfam
PF01090. Ribosomal_S19e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD003854. Ribosomal_S19e. 1 hit.
SMARTiView protein in SMART
SM01413. Ribosomal_S19e. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS00628. RIBOSOMAL_S19E. 1 hit.

Sequencei

Sequence statusi: Complete.

O18650-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTRATSIKDV DQHEATKSIA HFLKKSGKVK VPEWSDLVKL GVNKELAPVD
60 70 80 90 100
PDWFYTRAAS LARHLYFRPA GIGAFKKVYG GNKRRGVAPN HFQTSAGNCL
110 120 130 140
RKAVQQLEKI KWVEKHPDGK GRILSKQGRK DLDRIATSLR SSGQQA
Length:146
Mass (Da):16,322
Last modified:January 1, 1998 - v1
Checksum:iEA3F4040E89F9A04
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF016512 mRNA. Translation: AAB69445.1.
Z81586 Genomic DNA. Translation: CAB04689.1.
PIRiT24535.
RefSeqiNP_492555.1. NM_060154.6.
UniGeneiCel.34347.
Cel.5599.

Genome annotation databases

EnsemblMetazoaiT05F1.3.1; T05F1.3.1; WBGene00004488.
T05F1.3.2; T05F1.3.2; WBGene00004488.
GeneIDi172805.
KEGGicel:CELE_T05F1.3.
UCSCiT05F1.3.2. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS19_CAEEL
AccessioniPrimary (citable) accession number: O18650
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: January 1, 1998
Last modified: June 7, 2017
This is version 112 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families