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Protein
Submitted name:

Ribosomal Protein, Small subunit

Gene

rps-18

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotationImported

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Submitted name:
Ribosomal Protein, Small subunitImported
Gene namesi
Name:rps-18Imported
ORF Names:CELE_Y57G11C.16Imported, Y57G11C.16Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiY57G11C.16; CE14956; WBGene00004487; rps-18.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Proteomic databases

EPDiO18240.
PaxDbiO18240.
PeptideAtlasiO18240.

Expressioni

Gene expression databases

BgeeiWBGene00004487.

Interactioni

Protein-protein interaction databases

DIPiDIP-25985N.
MINTiMINT-1089736.
STRINGi6239.Y57G11C.16.1.

Structurei

3D structure databases

ProteinModelPortaliO18240.
SMRiO18240.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uS13 family.UniRule annotation

Phylogenomic databases

eggNOGiKOG3311. Eukaryota.
COG0099. LUCA.
GeneTreeiENSGT00390000012691.
HOGENOMiHOG000039877.
InParanoidiO18240.
KOiK02964.
OMAiHKRGQKV.
OrthoDBiEOG091G0W4F.
PhylomeDBiO18240.

Family and domain databases

Gene3Di4.10.910.10. 1 hit.
HAMAPiMF_01315. Ribosomal_S13_S18. 1 hit.
InterProiView protein in InterPro
IPR027437. 30s_Rbsml_prot_S13_C.
IPR001892. Ribosomal_S13.
IPR010979. Ribosomal_S13-like_H2TH.
IPR018269. Ribosomal_S13_CS.
PfamiView protein in Pfam
PF00416. Ribosomal_S13. 1 hit.
PIRSFiPIRSF002134. Ribosomal_S13. 1 hit.
SUPFAMiSSF46946. SSF46946. 1 hit.
PROSITEiView protein in PROSITE
PS00646. RIBOSOMAL_S13_1. 1 hit.
PS50159. RIBOSOMAL_S13_2. 1 hit.

Sequencei

Sequence statusi: Complete.

O18240-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLIIPEKFQ HIHRVMNTNI DGNRKVPYAL TAIKGVGRRF AFVCCRKADV
60 70 80 90 100
DVNKRAGELT EEDFDKIVTI MQNPSQYKIP NWFLNRQKDI KDGKTGQLLS
110 120 130 140 150
TAVDNKLRED LERMKKIRLH RGLRHYWGLR VRGQHTKTTG RKGRTVGVSK

KKGG
Length:154
Mass (Da):17,771
Last modified:January 1, 1998 - v1
Checksum:i5A940C1D70839AFD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAB16517.1.
PIRiT27228.
RefSeqiNP_502794.1. NM_070393.4.
UniGeneiCel.30551.

Genome annotation databases

EnsemblMetazoaiY57G11C.16; Y57G11C.16; WBGene00004487.
GeneIDi178408.
KEGGicel:CELE_Y57G11C.16.
UCSCiY57G11C.16.1. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiO18240_CAEEL
AccessioniPrimary (citable) accession number: O18240
Entry historyiIntegrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: July 5, 2017
This is version 130 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported