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Protein
Submitted name:

Uncharacterized protein

Gene

CELE_Y53C12B.1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-CEL-6791226. Major pathway of rRNA processing in the nucleolus.
SignaLinkiO18215.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:CELE_Y53C12B.1Imported, Y53C12B.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiY53C12B.1; CE14894; WBGene00013143.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

EPDiO18215.
PaxDbiO18215.
PRIDEiO18215.

Interactioni

Protein-protein interaction databases

STRINGi6239.Y53C12B.1.

Structurei

3D structure databases

ProteinModelPortaliO18215.
SMRiO18215. Positions 25-648.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini105 – 644540WD_REPEATS_REGIONInterPro annotationAdd
BLAST

Keywords - Domaini

RepeatUniRule annotation

Phylogenomic databases

eggNOGiKOG0319. Eukaryota.
ENOG410XPQD. LUCA.
GeneTreeiENSGT00840000129769.
HOGENOMiHOG000016188.
InParanoidiO18215.
KOiK14555.
OMAiTHHFRGS.
OrthoDBiEOG7J4461.
PhylomeDBiO18215.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR013934. SSU_processome_Utp13.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF08625. Utp13. 1 hit.
PF00400. WD40. 7 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 12 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 2 hits.
PROSITEiPS00678. WD_REPEATS_1. 2 hits.
PS50082. WD_REPEATS_2. 6 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O18215-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTEPIKEIAA KRSVEAVYTG GTVRWSANGQ KLFSTCTNVV KVIDLADNTA
60 70 80 90 100
SYTIGDPEDE LRITCTAVDK NRNRLLVAYN NQIIREYSIP LDPSTTKPEL
110 120 130 140 150
ARTWKTIHTA PILVMEFNEE GHLLATGSAD HIVKVWNLTE QQCTHTLKGP
160 170 180 190 200
SVVSAILFGK HEKLVVGYIE GQLNLYNIMR GAPKKLVNTW KSHNSHITAL
210 220 230 240 250
LQVPDSRVVV ALSRDQTMSI HETETQETLR VLPLYESIEG GAIGHNGNLF
260 270 280 290 300
TVGEEGVVKE FVIETAKLVR KKRIASSNLD HLAYDVVSNR FLAISAEQNL
310 320 330 340 350
IILDFENLKI ARQIVGFHDE IYSCCLLGKD ESHMAVASNT SEIRLYNTKT
360 370 380 390 400
LDCQLIRGHT ESVLSVVSPT WDTSLLASCS KDNSIIFWRL VTSPENDSCS
410 420 430 440 450
TLVPVAAATG HANTVTALAI SNTGRAPFLA SVSTDCTIKL WGLGVSTKLK
460 470 480 490 500
EVKIDAEKDF VEQLPKLTCS STMVAHGKDV NCVDISESDA LIATGGMDKL
510 520 530 540 550
VKLWQVDTHK MQLGIAGTLS GHRRGVGDVK FAKNSHKLAS CSGDMTIKIW
560 570 580 590 600
NISEKSCLQT ISGHSCAVFR VIFARNDSQL ISADSAGIIK IWTIKTADCE
610 620 630 640 650
CSIDAHTDKI WSLSKNHNES EFVTAGTDGR IVVWKDVTEE KQKAEDNKRR
660 670 680 690 700
EAIEQDQTLT NLLSQKRYSE ALVFALTLAK PFCAFKVINA LMAEETPEEL
710 720 730 740 750
GSAIRRLDTR QIEILLQFTV KWNTNSRTSS VAQRVLYEIV HIVDPEELVS
760 770 780 790
MPGAYGYIES FLPYTQRHMD RLDRAKQDVS LFDFVWRQMR SSV
Length:793
Mass (Da):88,061
Last modified:January 1, 1998 - v1
Checksum:iD0FE57AA34B7B65D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CAB16490.1.
PIRiT27133.
RefSeqiNP_496100.1. NM_063699.1.
UniGeneiCel.13957.

Genome annotation databases

EnsemblMetazoaiY53C12B.1; Y53C12B.1; WBGene00013143.
GeneIDi190203.
KEGGicel:CELE_Y53C12B.1.
UCSCiY53C12B.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CAB16490.1.
PIRiT27133.
RefSeqiNP_496100.1. NM_063699.1.
UniGeneiCel.13957.

3D structure databases

ProteinModelPortaliO18215.
SMRiO18215. Positions 25-648.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.Y53C12B.1.

Proteomic databases

EPDiO18215.
PaxDbiO18215.
PRIDEiO18215.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiY53C12B.1; Y53C12B.1; WBGene00013143.
GeneIDi190203.
KEGGicel:CELE_Y53C12B.1.
UCSCiY53C12B.1. c. elegans.

Organism-specific databases

CTDi190203.
WormBaseiY53C12B.1; CE14894; WBGene00013143.

Phylogenomic databases

eggNOGiKOG0319. Eukaryota.
ENOG410XPQD. LUCA.
GeneTreeiENSGT00840000129769.
HOGENOMiHOG000016188.
InParanoidiO18215.
KOiK14555.
OMAiTHHFRGS.
OrthoDBiEOG7J4461.
PhylomeDBiO18215.

Enzyme and pathway databases

ReactomeiR-CEL-6791226. Major pathway of rRNA processing in the nucleolus.
SignaLinkiO18215.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR013934. SSU_processome_Utp13.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF08625. Utp13. 1 hit.
PF00400. WD40. 7 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 12 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 2 hits.
PROSITEiPS00678. WD_REPEATS_1. 2 hits.
PS50082. WD_REPEATS_2. 6 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiO18215_CAEEL
AccessioniPrimary (citable) accession number: O18215
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: July 6, 2016
This is version 133 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.