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Protein
Submitted name:

Chromodomain and Helicase Domain protein

Gene

chd-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

HelicaseImported, Hydrolase

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
Chromodomain and Helicase Domain proteinImported
Gene namesi
Name:chd-1Imported
ORF Names:CELE_H06O01.2Imported, H06O01.2Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiH06O01.2; CE32454; WBGene00010369; chd-1.

Subcellular locationi

  • Nucleus SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

EPDiO17909.
PaxDbiO17909.
PRIDEiO17909.

Expressioni

Gene expression databases

BgeeiWBGene00010369.

Interactioni

Protein-protein interaction databases

STRINGi6239.H06O01.2.

Structurei

3D structure databases

ProteinModelPortaliO17909.
SMRiO17909. Positions 195-941, 1025-1222.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini195 – 28591ChromoInterPro annotationAdd
BLAST
Domaini310 – 37465ChromoInterPro annotationAdd
BLAST
Domaini417 – 587171Helicase ATP-bindingInterPro annotationAdd
BLAST
Domaini715 – 866152Helicase C-terminalInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG410IREB. Eukaryota.
ENOG410XNUT. LUCA.
GeneTreeiENSGT00760000119067.
HOGENOMiHOG000207917.
InParanoidiO17909.
KOiK11367.
OMAiMWNQSES.
OrthoDBiEOG091G00HF.
PhylomeDBiO17909.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR030485. CHD2.
IPR000953. Chromo/shadow_dom.
IPR023780. Chromo_domain.
IPR016197. Chromodomain-like.
IPR023779. Chromodomain_CS.
IPR002464. DNA/RNA_helicase_DEAH_CS.
IPR025260. DUF4208.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
[Graphical view]
PANTHERiPTHR10799:SF538. PTHR10799:SF538. 5 hits.
PfamiPF00385. Chromo. 2 hits.
PF13907. DUF4208. 1 hit.
PF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view]
SMARTiSM00298. CHROMO. 2 hits.
SM00487. DEXDc. 1 hit.
SM01176. DUF4208. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF54160. SSF54160. 3 hits.
PROSITEiPS00598. CHROMO_1. 2 hits.
PS50013. CHROMO_2. 2 hits.
PS00690. DEAH_ATP_HELICASE. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O17909-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MWNQSESSSG SDAEPDEKTD EPVREEENPE GNSTSEDNDE KEKAADSPES
60 70 80 90 100
SSDQSDDSDD ASENSSSSEP DEPAPKKKNN NNRGMDAETR KLLENENYFR
110 120 130 140 150
RSKRSKRQDD SPSDNSEESQ SSEDDWDDRR KPRRTVTKKV VKQTKKAVSV
160 170 180 190 200
VKRKSVKGNV NYAEKNSDDD IDDDDVLEWD EEPAVPAEGP AILTETVERV
210 220 230 240 250
IKWRHGVPGA TGSATTCYNI ADKGDPNDQI PGDKTEQQFF VKWTGWSHLH
260 270 280 290 300
NTWESENSLA LMNAKGLKKV QNYVKKQKEV EMWKRSADKE YIEFFECEQQ
310 320 330 340 350
MAEELCEEYK KVERVVAHQT SRDRAADGSM ATEYLIKWSG LPYSDCTWED
360 370 380 390 400
EKMVAPEQIK AYYHRIENLK SPNKNSNVLR KRPKFEKFES MPDFLKTDGE
410 420 430 440 450
STHKLRDYQL EGLNWMVYAW CKGNSSILAD EMGLGKTIQS ISLLASLFHR
460 470 480 490 500
YDLAGPYLVV VPLSTMAAWQ KEFAQWAPEM NLVVYMGDVV SRDMIRQYEW
510 520 530 540 550
FVGGTKKMKI NAILTTYEIL LKDKAFLSSI DWAALLVDEA HRLKNDESLL
560 570 580 590 600
YKSLTQFRFN HKLLITGTPL QNSLKELWAL LHFIMPEKFD CWEEFETAHN
610 620 630 640 650
ESNHKGISAL HKKLEPFLLR RVKKDVEKSL PPKTEQILRV DMTAHQKQFY
660 670 680 690 700
KWILTKNYRE LSKGVKGSIN GFVNLVMELK KCCNHASLTR QYDHIYDDAQ
710 720 730 740 750
GRLQQLLKSS GKLILLDKLL CRLKDKGHRV LIFSQMVMML DILQEYLQLR
760 770 780 790 800
RFPSQRLDGS MRADLRKQAL DHYNAPGSTD FAFLLSTRAG GLGINLATAD
810 820 830 840 850
TVIIFDSDWN PQNDLQAMSR AHRIGQTKTV NIYRLVTKGS VEEEIVERAK
860 870 880 890 900
RKLVLDHLVI QRMDTTGKTV LSKNATASGS VPFDKQELSA ILKFGAVELF
910 920 930 940 950
KEKEGEEQEP EVDIDRILMG AETREAEEEV MKENELLSSF KYANFAIDEE
960 970 980 990 1000
KDIAAATDEW AAIIPEEDRN RILEEERMKE LAEMNLAPRQ RKQPIPQVVE
1010 1020 1030 1040 1050
DDDGDDDEEE DDTGKKKKKK AVGNFTIPEI KRFIKSFRKF SMPLNRLEEI
1060 1070 1080 1090 1100
AQDAELEEHS TDEMKKLVES LSEACKKAAD EFDSNEKNGD AGAAESEKKD
1110 1120 1130 1140 1150
IERKFKFHTC DVNLKQIERS HAELKPLHEI LKSEETKTSF KPPANAKLQK
1160 1170 1180 1190 1200
GWDVDWSRPD DSALLLGVWK YGYGSWEAIK MDPTLGLADK IFIKDKTKKP
1210 1220 1230 1240 1250
QGKNLQVRVD YLLKLMSKDK VKTTEKKERK RKADDVPVGP EKKKRHTNNV
1260 1270 1280 1290 1300
PQEGEKKKKE KKEEKNSSSL KDQLALLSID KSLYGGALED SSAKPFLECV
1310 1320 1330 1340 1350
KLCMPVHKYM KKLKEAQEAK NQADEAKYLT RLGDSFLENL ETLIKKKPKT
1360 1370 1380 1390 1400
NIRKWYNYLW IFLCKFTLRE PGEMADRYRS ITSDKHKNHH HHHHHKSKEE
1410 1420 1430 1440 1450
KPKEAKDHKE RDREKDRERN RGERRMDHGE GTSKDHHREH HKDHHKDHHH
1460
REQHKEKNRR H
Length:1,461
Mass (Da):169,000
Last modified:March 1, 2003 - v2
Checksum:i0DEA2BB5BAB91958
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CAB07481.2.
PIRiT23056.
RefSeqiNP_491994.2. NM_059593.6.
UniGeneiCel.22674.

Genome annotation databases

EnsemblMetazoaiH06O01.2; H06O01.2; WBGene00010369.
GeneIDi172432.
KEGGicel:CELE_H06O01.2.
UCSCiH06O01.2. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CAB07481.2.
PIRiT23056.
RefSeqiNP_491994.2. NM_059593.6.
UniGeneiCel.22674.

3D structure databases

ProteinModelPortaliO17909.
SMRiO17909. Positions 195-941, 1025-1222.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.H06O01.2.

Proteomic databases

EPDiO17909.
PaxDbiO17909.
PRIDEiO17909.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiH06O01.2; H06O01.2; WBGene00010369.
GeneIDi172432.
KEGGicel:CELE_H06O01.2.
UCSCiH06O01.2. c. elegans.

Organism-specific databases

CTDi172432.
WormBaseiH06O01.2; CE32454; WBGene00010369; chd-1.

Phylogenomic databases

eggNOGiENOG410IREB. Eukaryota.
ENOG410XNUT. LUCA.
GeneTreeiENSGT00760000119067.
HOGENOMiHOG000207917.
InParanoidiO17909.
KOiK11367.
OMAiMWNQSES.
OrthoDBiEOG091G00HF.
PhylomeDBiO17909.

Gene expression databases

BgeeiWBGene00010369.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR030485. CHD2.
IPR000953. Chromo/shadow_dom.
IPR023780. Chromo_domain.
IPR016197. Chromodomain-like.
IPR023779. Chromodomain_CS.
IPR002464. DNA/RNA_helicase_DEAH_CS.
IPR025260. DUF4208.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
[Graphical view]
PANTHERiPTHR10799:SF538. PTHR10799:SF538. 5 hits.
PfamiPF00385. Chromo. 2 hits.
PF13907. DUF4208. 1 hit.
PF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view]
SMARTiSM00298. CHROMO. 2 hits.
SM00487. DEXDc. 1 hit.
SM01176. DUF4208. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF54160. SSF54160. 3 hits.
PROSITEiPS00598. CHROMO_1. 2 hits.
PS50013. CHROMO_2. 2 hits.
PS00690. DEAH_ATP_HELICASE. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO17909_CAEEL
AccessioniPrimary (citable) accession number: O17909
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: March 1, 2003
Last modified: September 7, 2016
This is version 138 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.