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Protein

Serpentine receptor class gamma-16

Gene

srg-16

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Serpentine receptor class gamma-16
Short name:
Protein srg-16
Gene namesi
Name:srg-16
ORF Names:F15A4.4
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiF15A4.4; CE33050; WBGene00005173; srg-16.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei25 – 4521HelicalSequence analysisAdd
BLAST
Transmembranei65 – 8521HelicalSequence analysisAdd
BLAST
Transmembranei87 – 10721HelicalSequence analysisAdd
BLAST
Transmembranei144 – 16421HelicalSequence analysisAdd
BLAST
Transmembranei187 – 20721HelicalSequence analysisAdd
BLAST
Transmembranei232 – 25221HelicalSequence analysisAdd
BLAST
Transmembranei264 – 28421HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 325325Serpentine receptor class gamma-16PRO_0000104565Add
BLAST

Proteomic databases

PaxDbiO17819.
PRIDEiO17819.

Structurei

3D structure databases

ProteinModelPortaliO17819.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410K9JF. Eukaryota.
ENOG4110J88. LUCA.
GeneTreeiENSGT00530000064349.
HOGENOMiHOG000021110.
InParanoidiO17819.
OMAiTSIRINC.
OrthoDBiEOG7N63RT.
PhylomeDBiO17819.

Family and domain databases

InterProiIPR000609. 7TM_GPCR_serpentine_rcpt_Srg.
[Graphical view]
PfamiPF02118. Srg. 1 hit.
[Graphical view]
PRINTSiPR00698. TMPROTEINSRG.

Sequencei

Sequence statusi: Complete.

O17819-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNTSIRINCS KSYDDFVEAS KFVGFCLYLI PGAILHVLIL RILLIKQRKV
60 70 80 90 100
FRNNSFFRIF ATDSVVSLVL IFWGIFFNRL FMFIPPLCPL VSPLFFEPSL
110 120 130 140 150
FLKMYYWMYN HARMSKSVAQ ILMVLNRMCC VISPIGYEKI WNKLAVTTVF
160 170 180 190 200
VVLALPFFGS WNLLLSRMYI FPSYGGFNAS YVKYVQWASL SMFQSIFLLI
210 220 230 240 250
ALCFTIICSS VSLYKLIILP DRIKSAEKSL CFVSLFYSIA FLVVAVSQLI
260 270 280 290 300
FVFCEVCLKN RLYLLFQFFA FDFLTVGSAV IIMLSSPQLS NFLGFSGTFY
310 320
RRKASPPGST VVKIFTSVHN NSSII
Length:325
Mass (Da):37,284
Last modified:June 1, 2003 - v2
Checksum:iB44D69BEBAB126DF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z81062 Genomic DNA. Translation: CAB02948.2.
PIRiT20954.
RefSeqiNP_496656.2. NM_064255.2.
UniGeneiCel.26424.

Genome annotation databases

EnsemblMetazoaiF15A4.4; F15A4.4; WBGene00005173.
GeneIDi184513.
KEGGicel:CELE_F15A4.4.
UCSCiF15A4.4. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z81062 Genomic DNA. Translation: CAB02948.2.
PIRiT20954.
RefSeqiNP_496656.2. NM_064255.2.
UniGeneiCel.26424.

3D structure databases

ProteinModelPortaliO17819.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiO17819.
PRIDEiO17819.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF15A4.4; F15A4.4; WBGene00005173.
GeneIDi184513.
KEGGicel:CELE_F15A4.4.
UCSCiF15A4.4. c. elegans.

Organism-specific databases

CTDi184513.
WormBaseiF15A4.4; CE33050; WBGene00005173; srg-16.

Phylogenomic databases

eggNOGiENOG410K9JF. Eukaryota.
ENOG4110J88. LUCA.
GeneTreeiENSGT00530000064349.
HOGENOMiHOG000021110.
InParanoidiO17819.
OMAiTSIRINC.
OrthoDBiEOG7N63RT.
PhylomeDBiO17819.

Miscellaneous databases

NextBioi925012.
PROiO17819.

Family and domain databases

InterProiIPR000609. 7TM_GPCR_serpentine_rcpt_Srg.
[Graphical view]
PfamiPF02118. Srg. 1 hit.
[Graphical view]
PRINTSiPR00698. TMPROTEINSRG.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2.

Entry informationi

Entry nameiSRG16_CAEEL
AccessioniPrimary (citable) accession number: O17819
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 25, 2005
Last sequence update: June 1, 2003
Last modified: November 11, 2015
This is version 83 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.