Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Uncharacterized protein

Gene

C53A5.6

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:C53A5.6Imported, CELE_C53A5.6Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiC53A5.6a; CE08955; WBGene00008266.

PTM / Processingi

Proteomic databases

EPDiO17698.
PaxDbiO17698.

Expressioni

Gene expression databases

ExpressionAtlasiO17698. baseline.

Interactioni

Protein-protein interaction databases

IntActiO17698. 7 interactions.
STRINGi6239.C53A5.6b.

Structurei

3D structure databases

ProteinModelPortaliO17698.
SMRiO17698. Positions 3-74, 222-554.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini9 – 4941RING-typeInterPro annotationAdd
BLAST

Keywords - Domaini

Zinc-fingerUniRule annotation

Phylogenomic databases

eggNOGiKOG4441. Eukaryota.
ENOG410XNX8. LUCA.
GeneTreeiENSGT00760000119153.
OrthoDBiEOG76DTXC.
PhylomeDBiO17698.

Family and domain databases

Gene3Di2.120.10.80. 1 hit.
3.30.40.10. 1 hit.
InterProiIPR015915. Kelch-typ_b-propeller.
IPR006652. Kelch_1.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF01344. Kelch_1. 5 hits.
[Graphical view]
SMARTiSM00612. Kelch. 5 hits.
SM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O17698-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSIVNTTECI ICYNEYDTEL RKPCIGTCGH SICESCKHQM VSSKCPQCNR
60 70 80 90 100
EEAFAITTIN YQVLELIKHF KSMQSGGVAP QAQSTNSLDE GTCSECTLHS
110 120 130 140 150
KKLRICKTCA VGKGVLKQAE GKKELVLVVG DDGVDEAMTR AKKMAICGDC
160 170 180 190 200
ALDGAQHEGH QTMQLALLKN SIEDQAPTNL GNKISKISEL SKQVCDDISD
210 220 230 240 250
KFAATIKSLQ NYFEKHEKLS PPGRKTHFNN IEAEMEKISD TIALVKDAGT
260 270 280 290 300
RLDFLNNEIE EHDRIVFQTK QPVTKANFVF ASQDPVLVAD RKQSAREPLL
310 320 330 340 350
IGVYDPKNRG WTPVGRMPNP KSNYAVACSK SQIYIVGGMN NGSWLNNVEM
360 370 380 390 400
YDREKNLRRD CNKMKRGRTR TSAGIHNNKM YVAGGYDSTY MNSVEVYDTD
410 420 430 440 450
QGEWKDGPSL QRPRADAAVV PCNGEVYVLG GFNGKEYEEK IEKLSEPGQK
460 470 480 490 500
FEIVGDMQGS RAGFGSCAFR GRIYIAGGWS NSSNTLRSVR SYDPLTKSWR
510 520 530 540 550
DEPSLSKDRK YFTLHSTNEA IYAIRGCADN WSLINEVERF DPEKRAWEII
560 570
SCSGPMVGAG SSASNEQAIT
Length:570
Mass (Da):63,294
Last modified:January 1, 1998 - v1
Checksum:i58B5E1BE24FBA0F5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAB03987.1.
PIRiT20166.
RefSeqiNP_001256596.1. NM_001269667.1.
UniGeneiCel.29324.

Genome annotation databases

EnsemblMetazoaiC53A5.6a; C53A5.6a; WBGene00008266.
GeneIDi183737.
KEGGicel:CELE_C53A5.6.
UCSCiC53A5.6. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAB03987.1.
PIRiT20166.
RefSeqiNP_001256596.1. NM_001269667.1.
UniGeneiCel.29324.

3D structure databases

ProteinModelPortaliO17698.
SMRiO17698. Positions 3-74, 222-554.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO17698. 7 interactions.
STRINGi6239.C53A5.6b.

Proteomic databases

EPDiO17698.
PaxDbiO17698.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC53A5.6a; C53A5.6a; WBGene00008266.
GeneIDi183737.
KEGGicel:CELE_C53A5.6.
UCSCiC53A5.6. c. elegans.

Organism-specific databases

CTDi183737.
WormBaseiC53A5.6a; CE08955; WBGene00008266.

Phylogenomic databases

eggNOGiKOG4441. Eukaryota.
ENOG410XNX8. LUCA.
GeneTreeiENSGT00760000119153.
OrthoDBiEOG76DTXC.
PhylomeDBiO17698.

Miscellaneous databases

NextBioi922176.

Gene expression databases

ExpressionAtlasiO17698. baseline.

Family and domain databases

Gene3Di2.120.10.80. 1 hit.
3.30.40.10. 1 hit.
InterProiIPR015915. Kelch-typ_b-propeller.
IPR006652. Kelch_1.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF01344. Kelch_1. 5 hits.
[Graphical view]
SMARTiSM00612. Kelch. 5 hits.
SM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiO17698_CAEEL
AccessioniPrimary (citable) accession number: O17698
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: May 11, 2016
This is version 130 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.