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Protein

60S ribosomal protein L38

Gene

rpl-38

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L38
Gene namesi
Name:rpl-38
ORF Names:C06B8.8
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiC06B8.8; CE20485; WBGene00004452; rpl-38.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002154381 – 7060S ribosomal protein L38Add BLAST70

Proteomic databases

EPDiO17570.
PaxDbiO17570.
PeptideAtlasiO17570.
PRIDEiO17570.

Expressioni

Gene expression databases

BgeeiWBGene00004452.

Interactioni

Protein-protein interaction databases

BioGridi45039. 1 interactor.
IntActiO17570. 1 interactor.
STRINGi6239.C06B8.8.4.

Structurei

3D structure databases

ProteinModelPortaliO17570.
SMRiO17570.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3499. Eukaryota.
ENOG4112229. LUCA.
GeneTreeiENSGT00390000003718.
HOGENOMiHOG000188979.
InParanoidiO17570.
KOiK02923.
OMAiRDIKQFI.
OrthoDBiEOG091G0SPL.
PhylomeDBiO17570.

Family and domain databases

InterProiView protein in InterPro
IPR002675. Ribosomal_L38e.
PANTHERiPTHR10965. PTHR10965. 1 hit.
PfamiView protein in Pfam
PF01781. Ribosomal_L38e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD010361. Ribosomal_L38e. 1 hit.

Sequencei

Sequence statusi: Complete.

O17570-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKEIKEIKD FLVKARRKDA KSVKIKKNSN NTKFKVRCAS YLYTLVVADK
60 70
DKAEKLKQSL PPGIQVKELK
Length:70
Mass (Da):8,077
Last modified:May 1, 1999 - v2
Checksum:i6C28CFD5B5F1FA8F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z81463 Genomic DNA. Translation: CAB03853.1.
PIRiT18996.
RefSeqiNP_506860.1. NM_074459.4.
UniGeneiCel.17981.

Genome annotation databases

EnsemblMetazoaiC06B8.8.1; C06B8.8.1; WBGene00004452.
C06B8.8.2; C06B8.8.2; WBGene00004452.
C06B8.8.3; C06B8.8.3; WBGene00004452.
C06B8.8.4; C06B8.8.4; WBGene00004452.
C06B8.8.5; C06B8.8.5; WBGene00004452.
C06B8.8.6; C06B8.8.6; WBGene00004452.
GeneIDi180044.
KEGGicel:CELE_C06B8.8.
UCSCiC06B8.8.1. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL38_CAEEL
AccessioniPrimary (citable) accession number: O17570
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 1, 1999
Last modified: July 5, 2017
This is version 97 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families