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Protein

60S ribosomal protein L38

Gene

rpl-38

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L38
Gene namesi
Name:rpl-38
ORF Names:C06B8.8
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiC06B8.8; CE20485; WBGene00004452; rpl-38.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002154381 – 7060S ribosomal protein L38Add BLAST70

Proteomic databases

EPDiO17570.
PaxDbiO17570.
PeptideAtlasiO17570.
PRIDEiO17570.

Expressioni

Gene expression databases

BgeeiWBGene00004452.

Interactioni

Protein-protein interaction databases

BioGridi45039. 1 interactor.
IntActiO17570. 1 interactor.
STRINGi6239.C06B8.8.4.

Structurei

3D structure databases

ProteinModelPortaliO17570.
SMRiO17570.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3499. Eukaryota.
ENOG4112229. LUCA.
GeneTreeiENSGT00390000003718.
HOGENOMiHOG000188979.
InParanoidiO17570.
KOiK02923.
OMAiRDIKQFI.
OrthoDBiEOG091G0SPL.
PhylomeDBiO17570.

Family and domain databases

InterProiView protein in InterPro
IPR002675. Ribosomal_L38e.
PANTHERiPTHR10965. PTHR10965. 1 hit.
PfamiView protein in Pfam
PF01781. Ribosomal_L38e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD010361. Ribosomal_L38e. 1 hit.

Sequencei

Sequence statusi: Complete.

O17570-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKEIKEIKD FLVKARRKDA KSVKIKKNSN NTKFKVRCAS YLYTLVVADK
60 70
DKAEKLKQSL PPGIQVKELK
Length:70
Mass (Da):8,077
Last modified:May 1, 1999 - v2
Checksum:i6C28CFD5B5F1FA8F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z81463 Genomic DNA. Translation: CAB03853.1.
PIRiT18996.
RefSeqiNP_506860.1. NM_074459.4.
UniGeneiCel.17981.

Genome annotation databases

EnsemblMetazoaiC06B8.8.1; C06B8.8.1; WBGene00004452.
C06B8.8.2; C06B8.8.2; WBGene00004452.
C06B8.8.3; C06B8.8.3; WBGene00004452.
C06B8.8.4; C06B8.8.4; WBGene00004452.
C06B8.8.5; C06B8.8.5; WBGene00004452.
C06B8.8.6; C06B8.8.6; WBGene00004452.
GeneIDi180044.
KEGGicel:CELE_C06B8.8.
UCSCiC06B8.8.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z81463 Genomic DNA. Translation: CAB03853.1.
PIRiT18996.
RefSeqiNP_506860.1. NM_074459.4.
UniGeneiCel.17981.

3D structure databases

ProteinModelPortaliO17570.
SMRiO17570.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi45039. 1 interactor.
IntActiO17570. 1 interactor.
STRINGi6239.C06B8.8.4.

Proteomic databases

EPDiO17570.
PaxDbiO17570.
PeptideAtlasiO17570.
PRIDEiO17570.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC06B8.8.1; C06B8.8.1; WBGene00004452.
C06B8.8.2; C06B8.8.2; WBGene00004452.
C06B8.8.3; C06B8.8.3; WBGene00004452.
C06B8.8.4; C06B8.8.4; WBGene00004452.
C06B8.8.5; C06B8.8.5; WBGene00004452.
C06B8.8.6; C06B8.8.6; WBGene00004452.
GeneIDi180044.
KEGGicel:CELE_C06B8.8.
UCSCiC06B8.8.1. c. elegans.

Organism-specific databases

CTDi180044.
WormBaseiC06B8.8; CE20485; WBGene00004452; rpl-38.

Phylogenomic databases

eggNOGiKOG3499. Eukaryota.
ENOG4112229. LUCA.
GeneTreeiENSGT00390000003718.
HOGENOMiHOG000188979.
InParanoidiO17570.
KOiK02923.
OMAiRDIKQFI.
OrthoDBiEOG091G0SPL.
PhylomeDBiO17570.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiPR:O17570.

Gene expression databases

BgeeiWBGene00004452.

Family and domain databases

InterProiView protein in InterPro
IPR002675. Ribosomal_L38e.
PANTHERiPTHR10965. PTHR10965. 1 hit.
PfamiView protein in Pfam
PF01781. Ribosomal_L38e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD010361. Ribosomal_L38e. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL38_CAEEL
AccessioniPrimary (citable) accession number: O17570
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 1, 1999
Last modified: June 7, 2017
This is version 96 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.