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Protein
Submitted name:

Nuclear transcription Factor Y, B (Beta) subunit

Gene

nfyb-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

ReactomeiR-CEL-2426168. Activation of gene expression by SREBF (SREBP).

Names & Taxonomyi

Protein namesi
Submitted name:
Nuclear transcription Factor Y, B (Beta) subunitImported
Gene namesi
Name:nfyb-1Imported
ORF Names:CELE_W10D9.4Imported, W10D9.4Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiW10D9.4a; CE14792; WBGene00021132; nfyb-1.

Subcellular locationi

  • Nucleus SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

EPDiO17286.
PaxDbiO17286.
PRIDEiO17286.

Interactioni

Protein-protein interaction databases

DIPiDIP-25261N.
IntActiO17286. 14 interactions.
MINTiMINT-1048257.
STRINGi6239.W10D9.4.

Structurei

3D structure databases

ProteinModelPortaliO17286.
SMRiO17286. Positions 65-150.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini65 – 12965CBFD_NFYB_HMFInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG0869. Eukaryota.
COG2036. LUCA.
GeneTreeiENSGT00550000074689.
InParanoidiO17286.
OrthoDBiEOG7RNK2W.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR003958. CBFA_NFYB_domain.
IPR009072. Histone-fold.
[Graphical view]
PfamiPF00808. CBFD_NFYB_HMF. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.

Sequencei

Sequence statusi: Complete.

O17286-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDPKPINEGM LLEDHDHGMP EEEEITEDDM NGIHNIEEDT RTISEIAMEL
60 70 80 90 100
HHPNKSQVLL DQERFLPIAN VVRIMKTQMD PQAKLAKDAK ECAQECVSEF
110 120 130 140 150
ISFIASEAAE ICNITKRKTI TADDLLTAME ATGFDNYAEP MRIFLQKYRQ
160 170 180 190 200
AHKITGPIHR THPDYVRPPQ FQMDPFVRPL FFDTEQGRRC TETQYVINGS
210 220 230 240 250
EIVKNAPLGE EWNEQTGTLN TRADGYYMEE PMEPMPMEEV EIEEHEEIIE
260 270 280 290 300
QDSLGAIALE QQGQMQIYVD PKTKQHFAAK ETPNGMELYP LIIQDTPLQL
310 320 330 340 350
ENVSGPNQFV MNMPDGRAIP HGMGQEEPQP VSSSSVMRKI GQNPSSYAQQ
360 370 380 390 400
HHHVSHVEQH DDVEYEEEEE VDQVEEDTVP VPIAPRPAAT RVQPKRTPTK

RKK
Length:403
Mass (Da):46,062
Last modified:January 1, 1998 - v1
Checksum:i72724FFCD9DA89FF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD65581.1.
PIRiE88021.
RefSeqiNP_493740.1. NM_061339.4.
UniGeneiCel.6799.

Genome annotation databases

EnsemblMetazoaiW10D9.4; W10D9.4; WBGene00021132.
GeneIDi173435.
KEGGicel:CELE_W10D9.4.
UCSCiW10D9.4. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD65581.1.
PIRiE88021.
RefSeqiNP_493740.1. NM_061339.4.
UniGeneiCel.6799.

3D structure databases

ProteinModelPortaliO17286.
SMRiO17286. Positions 65-150.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-25261N.
IntActiO17286. 14 interactions.
MINTiMINT-1048257.
STRINGi6239.W10D9.4.

Proteomic databases

EPDiO17286.
PaxDbiO17286.
PRIDEiO17286.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiW10D9.4; W10D9.4; WBGene00021132.
GeneIDi173435.
KEGGicel:CELE_W10D9.4.
UCSCiW10D9.4. c. elegans.

Organism-specific databases

CTDi173435.
WormBaseiW10D9.4a; CE14792; WBGene00021132; nfyb-1.

Phylogenomic databases

eggNOGiKOG0869. Eukaryota.
COG2036. LUCA.
GeneTreeiENSGT00550000074689.
InParanoidiO17286.
OrthoDBiEOG7RNK2W.

Enzyme and pathway databases

ReactomeiR-CEL-2426168. Activation of gene expression by SREBF (SREBP).

Miscellaneous databases

PROiO17286.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR003958. CBFA_NFYB_domain.
IPR009072. Histone-fold.
[Graphical view]
PfamiPF00808. CBFD_NFYB_HMF. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiO17286_CAEEL
AccessioniPrimary (citable) accession number: O17286
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: July 6, 2016
This is version 122 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.